Lsat_1_v5_gn_3_91040.1 (ATUBP4, UBP4)

Aliases : ATUBP4, UBP4

Description : deubiquitinase *(UBP3-4)

Gene families : OG0000648 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0000648_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_3_91040.1

Target	Alias	Description	ECC score	Gene Family Method	Actions
Lsat_1_v5_gn_2_71181.1	ATUBP4, UBP4	deubiquitinase *(UBP3-4)	0.03	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004843	cysteine-type deubiquitinase activity	IEA	Interproscan
BP	GO:0006508	proteolysis	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008233	peptidase activity	None	Extended
MF	GO:0008234	cysteine-type peptidase activity	None	Extended
BP	GO:0016579	protein deubiquitination	IEA	Interproscan
MF	GO:0016787	hydrolase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019783	ubiquitin-like protein peptidase activity	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043687	post-translational protein modification	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0070646	protein modification by small protein removal	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0101005	deubiquitinase activity	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0005384	manganese ion transmembrane transporter activity	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006873	intracellular monoatomic ion homeostasis	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006888	endoplasmic reticulum to Golgi vesicle-mediated transport	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0010215	cellulose microfibril organization	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0016043	cellular component organization	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016830	carbon-carbon lyase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016831	carboxy-lyase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016984	ribulose-bisphosphate carboxylase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0019725	cellular homeostasis	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0030003	intracellular monoatomic cation homeostasis	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0030026	intracellular manganese ion homeostasis	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0030120	vesicle coat	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0030127	COPII vesicle coat	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0030198	extracellular matrix organization	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0032392	DNA geometric change	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0032508	DNA duplex unwinding	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0042592	homeostatic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0043062	extracellular structure organization	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0046915	transition metal ion transmembrane transporter activity	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0048193	Golgi vesicle transport	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0048878	chemical homeostasis	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0050801	monoatomic ion homeostasis	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0051276	chromosome organization	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0055071	manganese ion homeostasis	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0055080	monoatomic cation homeostasis	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0055082	intracellular chemical homeostasis	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0071103	DNA conformation change	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0071840	cellular component organization or biogenesis	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0098771	inorganic ion homeostasis	IEP	Lactuca Sativa GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR001394	Peptidase_C19_UCH	16	187
IPR029347	Raptor_N	212	248

External Links

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Lsat_1_v5_gn_3_91040.1 (ATUBP4, UBP4)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation