Lsat_1_v5_gn_3_7441.1 (BRR2a, emb1507, BRR2)

Aliases : BRR2a, emb1507, BRR2

Description : RNA helicase *(Brr2)

Gene families : OG0001711 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0001711_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_3_7441.1
Cluster	Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm): Cluster_18

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
CC	GO:0000148	1,3-beta-D-glucan synthase complex	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0003843	1,3-beta-D-glucan synthase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0005839	proteasome core complex	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006074	(1->3)-beta-D-glucan metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006075	(1->3)-beta-D-glucan biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006302	double-strand break repair	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006310	DNA recombination	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0016459	myosin complex	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0019915	lipid storage	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0051235	maintenance of location	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0098797	plasma membrane protein complex	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:1902494	catalytic complex	IEP	Lactuca Sativa GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR004179	Sec63-dom	1856	2178
IPR041094	Brr2_helicase_PWI	279	388
IPR011545	DEAD/DEAH_box_helicase_dom	520	695
IPR001650	Helicase_C	755	896
IPR004179	Sec63-dom	1020	1318
IPR011545	DEAD/DEAH_box_helicase_dom	1367	1533

External Links

No external refs found!