Aliases : RDM16
Description : protein factor PRPF3 of U4/U6 small nuclear ribonucleoprotein particle (snRNP). component *(PRPF3) of U4/U6.U5 tri-snRNP complex
Gene families : OG0008783 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_3_65860.1 | |
Cluster | Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm): Cluster_18 |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No GO annotation available for this sequence |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0000154 | rRNA modification | IEP | Lactuca Sativa GO terms from Neighborhoods |
MF | GO:0000166 | nucleotide binding | IEP | Lactuca Sativa GO terms from Neighborhoods |
BP | GO:0000375 | RNA splicing, via transesterification reactions | IEP | Lactuca Sativa GO terms from Neighborhoods |
BP | GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | IEP | Lactuca Sativa GO terms from Neighborhoods |
BP | GO:0000381 | regulation of alternative mRNA splicing, via spliceosome | IEP | Lactuca Sativa GO terms from Neighborhoods |
BP | GO:0000398 | mRNA splicing, via spliceosome | IEP | Lactuca Sativa GO terms from Neighborhoods |
CC | GO:0000502 | proteasome complex | IEP | Lactuca Sativa GO terms from Neighborhoods |
BP | GO:0001510 | RNA methylation | IEP | Lactuca Sativa GO terms from Neighborhoods |
MF | GO:0004672 | protein kinase activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
MF | GO:0005509 | calcium ion binding | IEP | Lactuca Sativa GO terms from Neighborhoods |
MF | GO:0005524 | ATP binding | IEP | Lactuca Sativa GO terms from Neighborhoods |
MF | GO:0005525 | GTP binding | IEP | Lactuca Sativa GO terms from Neighborhoods |
CC | GO:0005681 | spliceosomal complex | IEP | Lactuca Sativa GO terms from Neighborhoods |
BP | GO:0006367 | transcription initiation at RNA polymerase II promoter | IEP | Lactuca Sativa GO terms from Neighborhoods |
BP | GO:0006468 | protein phosphorylation | IEP | Lactuca Sativa GO terms from Neighborhoods |
BP | GO:0006612 | protein targeting to membrane | IEP | Lactuca Sativa GO terms from Neighborhoods |
BP | GO:0006613 | cotranslational protein targeting to membrane | IEP | Lactuca Sativa GO terms from Neighborhoods |
BP | GO:0006614 | SRP-dependent cotranslational protein targeting to membrane | IEP | Lactuca Sativa GO terms from Neighborhoods |
BP | GO:0006886 | intracellular protein transport | IEP | Lactuca Sativa GO terms from Neighborhoods |
BP | GO:0008104 | protein localization | IEP | Lactuca Sativa GO terms from Neighborhoods |
MF | GO:0008170 | N-methyltransferase activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
MF | GO:0008312 | 7S RNA binding | IEP | Lactuca Sativa GO terms from Neighborhoods |
MF | GO:0008649 | rRNA methyltransferase activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
MF | GO:0008757 | S-adenosylmethionine-dependent methyltransferase activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
BP | GO:0009894 | regulation of catabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
BP | GO:0015031 | protein transport | IEP | Lactuca Sativa GO terms from Neighborhoods |
MF | GO:0016301 | kinase activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
BP | GO:0016310 | phosphorylation | IEP | Lactuca Sativa GO terms from Neighborhoods |
MF | GO:0016436 | rRNA (uridine) methyltransferase activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
MF | GO:0016462 | pyrophosphatase activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
MF | GO:0016624 | oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor | IEP | Lactuca Sativa GO terms from Neighborhoods |
MF | GO:0016772 | transferase activity, transferring phosphorus-containing groups | IEP | Lactuca Sativa GO terms from Neighborhoods |
MF | GO:0016773 | phosphotransferase activity, alcohol group as acceptor | IEP | Lactuca Sativa GO terms from Neighborhoods |
MF | GO:0017076 | purine nucleotide binding | IEP | Lactuca Sativa GO terms from Neighborhoods |
MF | GO:0017111 | ribonucleoside triphosphate phosphatase activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
MF | GO:0019001 | guanyl nucleotide binding | IEP | Lactuca Sativa GO terms from Neighborhoods |
BP | GO:0031167 | rRNA methylation | IEP | Lactuca Sativa GO terms from Neighborhoods |
MF | GO:0032553 | ribonucleotide binding | IEP | Lactuca Sativa GO terms from Neighborhoods |
MF | GO:0032555 | purine ribonucleotide binding | IEP | Lactuca Sativa GO terms from Neighborhoods |
MF | GO:0032559 | adenyl ribonucleotide binding | IEP | Lactuca Sativa GO terms from Neighborhoods |
MF | GO:0032561 | guanyl ribonucleotide binding | IEP | Lactuca Sativa GO terms from Neighborhoods |
BP | GO:0033036 | macromolecule localization | IEP | Lactuca Sativa GO terms from Neighborhoods |
MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | Lactuca Sativa GO terms from Neighborhoods |
MF | GO:0036094 | small molecule binding | IEP | Lactuca Sativa GO terms from Neighborhoods |
BP | GO:0036211 | protein modification process | IEP | Lactuca Sativa GO terms from Neighborhoods |
BP | GO:0042176 | regulation of protein catabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
MF | GO:0043167 | ion binding | IEP | Lactuca Sativa GO terms from Neighborhoods |
MF | GO:0043168 | anion binding | IEP | Lactuca Sativa GO terms from Neighborhoods |
BP | GO:0043412 | macromolecule modification | IEP | Lactuca Sativa GO terms from Neighborhoods |
BP | GO:0043484 | regulation of RNA splicing | IEP | Lactuca Sativa GO terms from Neighborhoods |
BP | GO:0045047 | protein targeting to ER | IEP | Lactuca Sativa GO terms from Neighborhoods |
BP | GO:0045184 | establishment of protein localization | IEP | Lactuca Sativa GO terms from Neighborhoods |
BP | GO:0046907 | intracellular transport | IEP | Lactuca Sativa GO terms from Neighborhoods |
BP | GO:0048024 | regulation of mRNA splicing, via spliceosome | IEP | Lactuca Sativa GO terms from Neighborhoods |
CC | GO:0048500 | signal recognition particle | IEP | Lactuca Sativa GO terms from Neighborhoods |
BP | GO:0050684 | regulation of mRNA processing | IEP | Lactuca Sativa GO terms from Neighborhoods |
MF | GO:0051539 | 4 iron, 4 sulfur cluster binding | IEP | Lactuca Sativa GO terms from Neighborhoods |
BP | GO:0051641 | cellular localization | IEP | Lactuca Sativa GO terms from Neighborhoods |
BP | GO:0051649 | establishment of localization in cell | IEP | Lactuca Sativa GO terms from Neighborhoods |
MF | GO:0070042 | rRNA (uridine-N3-)-methyltransferase activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
BP | GO:0070475 | rRNA base methylation | IEP | Lactuca Sativa GO terms from Neighborhoods |
BP | GO:0070727 | cellular macromolecule localization | IEP | Lactuca Sativa GO terms from Neighborhoods |
BP | GO:0070972 | protein localization to endoplasmic reticulum | IEP | Lactuca Sativa GO terms from Neighborhoods |
BP | GO:0071702 | organic substance transport | IEP | Lactuca Sativa GO terms from Neighborhoods |
BP | GO:0071705 | nitrogen compound transport | IEP | Lactuca Sativa GO terms from Neighborhoods |
BP | GO:0072599 | establishment of protein localization to endoplasmic reticulum | IEP | Lactuca Sativa GO terms from Neighborhoods |
MF | GO:0097367 | carbohydrate derivative binding | IEP | Lactuca Sativa GO terms from Neighborhoods |
MF | GO:0140102 | catalytic activity, acting on a rRNA | IEP | Lactuca Sativa GO terms from Neighborhoods |
MF | GO:1901265 | nucleoside phosphate binding | IEP | Lactuca Sativa GO terms from Neighborhoods |
BP | GO:1903311 | regulation of mRNA metabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
CC | GO:1905368 | peptidase complex | IEP | Lactuca Sativa GO terms from Neighborhoods |
CC | GO:1905369 | endopeptidase complex | IEP | Lactuca Sativa GO terms from Neighborhoods |
CC | GO:1990904 | ribonucleoprotein complex | IEP | Lactuca Sativa GO terms from Neighborhoods |
No external refs found! |