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  5. Lsat_1_v5_gn_3_600.1

Lsat_1_v5_gn_3_600.1 (EMB976, PDM4)


Aliases : EMB976, PDM4

Description : plastidial splicing factor *(PDM4)


Gene families : OG0016007 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_3_600.1
Cluster Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm): Cluster_30

Target Alias Description ECC score Gene Family Method Actions
Spov3_chr3.04396 EMB976, PDM4 plastidial splicing factor *(PDM4) 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000159 protein phosphatase type 2A complex IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0000166 nucleotide binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0003697 single-stranded DNA binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0004645 1,4-alpha-oligoglucan phosphorylase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0004721 phosphoprotein phosphatase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0004749 ribose phosphate diphosphokinase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0004860 protein kinase inhibitor activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0004861 cyclin-dependent protein serine/threonine kinase inhibitor activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0005215 transporter activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0005216 monoatomic ion channel activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0005253 monoatomic anion channel activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0005254 chloride channel activity IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006753 nucleoside phosphate metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0008184 glycogen phosphorylase activity IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0008287 protein serine/threonine phosphatase complex IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0008509 monoatomic anion transmembrane transporter activity IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0009117 nucleotide metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0009654 photosystem II oxygen evolving complex IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0015075 monoatomic ion transmembrane transporter activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0015108 chloride transmembrane transporter activity IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0015969 guanosine tetraphosphate metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0016311 dephosphorylation IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0016459 myosin complex IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0016538 cyclin-dependent protein serine/threonine kinase regulator activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0016778 diphosphotransferase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0017076 purine nucleotide binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0019207 kinase regulator activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0019210 kinase inhibitor activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0019887 protein kinase regulator activity IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0019898 extrinsic component of membrane IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0022857 transmembrane transporter activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0030151 molybdenum ion binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0030291 protein serine/threonine kinase inhibitor activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0030554 adenyl nucleotide binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0032553 ribonucleotide binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0032555 purine ribonucleotide binding IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0033865 nucleoside bisphosphate metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0033875 ribonucleoside bisphosphate metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0034032 purine nucleoside bisphosphate metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0034035 purine ribonucleoside bisphosphate metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0036094 small molecule binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0043167 ion binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0043168 anion binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0043531 ADP binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0070403 NAD+ binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0097159 organic cyclic compound binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0097367 carbohydrate derivative binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:1901265 nucleoside phosphate binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:1901363 heterocyclic compound binding IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:1903293 phosphatase complex IEP Lactuca Sativa GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_rpt 434 462
IPR002885 Pentatricopeptide_rpt 541 567
IPR002885 Pentatricopeptide_rpt 503 530
IPR002885 Pentatricopeptide_rpt 696 718
IPR002885 Pentatricopeptide_rpt 892 953
IPR002885 Pentatricopeptide_rpt 762 805
IPR002885 Pentatricopeptide_rpt 833 877
IPR002885 Pentatricopeptide_rpt 181 230
IPR033443 PPR_long 274 411
No external refs found!