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  5. Lsat_1_v5_gn_3_27720.1

Lsat_1_v5_gn_3_27720.1


Description : E3 ubiquitin ligase *(CHY)


Gene families : OG0016127 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_3_27720.1
Cluster Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm): Cluster_117


Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003905 alkylbase DNA N-glycosylase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0005515 protein binding IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006284 base-excision repair IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0008725 DNA-3-methyladenine glycosylase activity IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0009314 response to radiation IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0009416 response to light stimulus IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0009581 detection of external stimulus IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0009582 detection of abiotic stimulus IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0009583 detection of light stimulus IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0009584 detection of visible light IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0009605 response to external stimulus IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0009628 response to abiotic stimulus IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0017119 Golgi transport complex IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0019104 DNA N-glycosylase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0043733 DNA-3-methylbase glycosylase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0051087 protein-folding chaperone binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0051287 NAD binding IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0051606 detection of stimulus IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0099023 vesicle tethering complex IEP Lactuca Sativa GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR008913 Znf_CHY 30 111
IPR001841 Znf_RING 165 208
IPR039512 RCHY1_zinc-ribbon 213 271
No external refs found!