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  5. Lsat_1_v5_gn_3_25780.1

Lsat_1_v5_gn_3_25780.1 (CRR22)


Aliases : CRR22

Description : RNA editing factor *(CRR22)


Gene families : OG0016337 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_3_25780.1
Cluster Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm): Cluster_104


Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0015276 ligand-gated monoatomic ion channel activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0022834 ligand-gated channel activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0022836 gated channel activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0022839 monoatomic ion gated channel activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0031072 heat shock protein binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0051082 unfolded protein binding IEP Lactuca Sativa GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_rpt 482 508
IPR002885 Pentatricopeptide_rpt 381 406
IPR002885 Pentatricopeptide_rpt 582 607
IPR002885 Pentatricopeptide_rpt 108 136
IPR032867 DYW_dom 723 814
IPR046848 E_motif 625 686
IPR002885 Pentatricopeptide_rpt 205 248
IPR002885 Pentatricopeptide_rpt 409 452
IPR002885 Pentatricopeptide_rpt 509 555
IPR002885 Pentatricopeptide_rpt 305 353
No external refs found!