Lsat_1_v5_gn_3_22620.1 (RPS3)

Aliases : RPS3

Description : component *(uS3c) of small plastid ribosomal-subunit proteome. component *(uL22c) of large plastid ribosomal-subunit proteome

Gene families : OG0001141 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0001141_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_3_22620.1
Cluster	Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm): Cluster_140

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003743	translation initiation factor activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006413	translational initiation	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006754	ATP biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0008324	monoatomic cation transmembrane transporter activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0009055	electron transfer activity	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009142	nucleoside triphosphate biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009145	purine nucleoside triphosphate biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009201	ribonucleoside triphosphate biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009206	purine ribonucleoside triphosphate biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0009521	photosystem	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0009522	photosystem I	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0009523	photosystem II	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0009579	thylakoid	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0015075	monoatomic ion transmembrane transporter activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0015078	proton transmembrane transporter activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0015318	inorganic molecular entity transmembrane transporter activity	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0015979	photosynthesis	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0015986	proton motive force-driven ATP synthesis	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0016020	membrane	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0018130	heterocycle biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0019438	aromatic compound biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0022890	inorganic cation transmembrane transporter activity	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0032991	protein-containing complex	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0033177	proton-transporting two-sector ATPase complex, proton-transporting domain	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0034062	5'-3' RNA polymerase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0045263	proton-transporting ATP synthase complex, coupling factor F(o)	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0097747	RNA polymerase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0098796	membrane protein complex	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:1901362	organic cyclic compound biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR001351	Ribosomal_uS3_C	267	349
IPR001063	Ribosomal_uL22	13	114

External Links

No external refs found!

Lsat_1_v5_gn_3_22620.1 (RPS3)

Expression Profile

Co-expression Networks

Functional Annotation