Lsat_1_v5_gn_3_130901.1 (HB4, ATHB-4, ATHB4)

Aliases : HB4, ATHB-4, ATHB4

Description : HD-ZIP I/II-type transcription factor

Gene families : OG0034232 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_3_130901.1
Cluster	Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm): Cluster_48

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
MF	GO:0043565	sequence-specific DNA binding	IEA	Interproscan
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000096	sulfur amino acid metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0004435	phosphatidylinositol phospholipase C activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0004620	phospholipase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0004629	phospholipase C activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0004650	polygalacturonase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006534	cysteine metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006790	sulfur compound metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0008081	phosphoric diester hydrolase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009069	serine family amino acid metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009092	homoserine metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009314	response to radiation	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009416	response to light stimulus	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009581	detection of external stimulus	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009582	detection of abiotic stimulus	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009583	detection of light stimulus	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009584	detection of visible light	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009605	response to external stimulus	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009628	response to abiotic stimulus	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016298	lipase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0019346	transsulfuration	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0019842	vitamin binding	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0030170	pyridoxal phosphate binding	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0050667	homocysteine metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0051606	detection of stimulus	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0070279	vitamin B6 binding	IEP	Lactuca Sativa GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR006712	HD-ZIP_N	1	141
IPR003106	Leu_zip_homeo	293	327
IPR003106	Leu_zip_homeo	225	259
IPR001356	Homeobox_dom	260	291
IPR001356	Homeobox_dom	169	223

External Links

No external refs found!

Lsat_1_v5_gn_3_130901.1 (HB4, ATHB-4, ATHB4)

Expression Profile

Co-expression Networks

Functional Annotation