Lsat_1_v5_gn_3_126840.1 (ATRABD2A, RABD2A,...)

Aliases : ATRABD2A, RABD2A, ARA-5, RA-5, ARA5, ATRAB1B

Description : D-class RAB GTPase

Gene families : OG0003419 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0003419_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_3_126840.1
Cluster	Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm): Cluster_18

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003924	GTPase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005525	GTP binding	IEA	Interproscan
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	None	Extended
MF	GO:0019001	guanyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032561	guanyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000375	RNA splicing, via transesterification reactions	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0000398	mRNA splicing, via spliceosome	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0005092	GDP-dissociation inhibitor activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0005515	protein binding	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006605	protein targeting	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006612	protein targeting to membrane	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006613	cotranslational protein targeting to membrane	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006614	SRP-dependent cotranslational protein targeting to membrane	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006886	intracellular protein transport	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0007264	small GTPase mediated signal transduction	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0008312	7S RNA binding	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0008380	RNA splicing	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0009916	alternative oxidase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0010035	response to inorganic substance	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0010038	response to metal ion	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0010181	FMN binding	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016679	oxidoreductase activity, acting on diphenols and related substances as donors	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016682	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016756	glutathione gamma-glutamylcysteinyltransferase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0019748	secondary metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0031267	small GTPase binding	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0032182	ubiquitin-like protein binding	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0043130	ubiquitin binding	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0044550	secondary metabolite biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0045047	protein targeting to ER	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0046937	phytochelatin metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0046938	phytochelatin biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0048500	signal recognition particle	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0051020	GTPase binding	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0051539	4 iron, 4 sulfur cluster binding	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0051668	localization within membrane	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0070972	protein localization to endoplasmic reticulum	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0072599	establishment of protein localization to endoplasmic reticulum	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0072657	protein localization to membrane	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0090150	establishment of protein localization to membrane	IEP	Lactuca Sativa GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR001806	Small_GTPase	10	170

External Links

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Lsat_1_v5_gn_3_126840.1 (ATRABD2A, RABD2A,...)

Expression Profile

Co-expression Networks

Functional Annotation