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  5. Lsat_1_v5_gn_3_109100.1

Lsat_1_v5_gn_3_109100.1 (PAPS2)


Aliases : PAPS2

Description : poly(A) RNA polymerase


Gene families : OG0034091 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_3_109100.1
Cluster Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm): Cluster_228


Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0004652 obsolete polynucleotide adenylyltransferase activity IEA Interproscan
MF GO:0016779 nucleotidyltransferase activity IEA Interproscan
BP GO:0043631 obsolete RNA polyadenylation IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000502 proteasome complex IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0004521 RNA endonuclease activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0004525 ribonuclease III activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0004659 prenyltransferase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0005515 protein binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0008318 protein prenyltransferase activity IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0009894 regulation of catabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0016197 endosomal transport IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0016482 cytosolic transport IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0016891 RNA endonuclease activity, producing 5'-phosphomonoesters IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0018342 protein prenylation IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0031072 heat shock protein binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0042147 retrograde transport, endosome to Golgi IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0042176 regulation of protein catabolic process IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0051082 unfolded protein binding IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0051246 regulation of protein metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0097354 prenylation IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:1905368 peptidase complex IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:1905369 endopeptidase complex IEP Lactuca Sativa GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR007010 PolA_pol_RNA-bd_dom 407 478
IPR007010 PolA_pol_RNA-bd_dom 345 402
IPR007012 PolA_pol_cen_dom 26 342
IPR002934 Polymerase_NTP_transf_dom 76 149
No external refs found!