Lsat_1_v5_gn_2_90281.1 (AP1, AtAP1, AGL7)

Aliases : AP1, AtAP1, AGL7

Description : regulatory protein *(AP1/CAL/FUL) of floral meristem identity control. MADS/AGL-type transcription factor

Gene families : OG0008884 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_2_90281.1
Cluster	Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm): Cluster_73

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
MF	GO:0046983	protein dimerization activity	IEA	Interproscan
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000213	tRNA-intron endonuclease activity	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0000394	RNA splicing, via endonucleolytic cleavage and ligation	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0004519	endonuclease activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0004521	RNA endonuclease activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0004540	RNA nuclease activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0004549	tRNA-specific ribonuclease activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0004650	polygalacturonase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006388	tRNA splicing, via endonucleolytic cleavage and ligation	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006399	tRNA metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0008033	tRNA processing	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0008380	RNA splicing	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016892	RNA endonuclease activity, producing 3'-phosphomonoesters	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016894	endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0032502	developmental process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0034660	ncRNA metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0048364	root development	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0048367	shoot system development	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0048731	system development	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0048856	anatomical structure development	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0099402	plant organ development	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0140098	catalytic activity, acting on RNA	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	Lactuca Sativa GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR002487	TF_Kbox	85	172
IPR002100	TF_MADSbox	10	57

External Links

No external refs found!

Lsat_1_v5_gn_2_90281.1 (AP1, AtAP1, AGL7)

Expression Profile

Co-expression Networks

Functional Annotation