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  5. Lsat_1_v5_gn_2_89461.1

Lsat_1_v5_gn_2_89461.1


Description : not classified


Gene families : OG0000293 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0000293_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_2_89461.1
Cluster Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm): Cluster_218


Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004843 cysteine-type deubiquitinase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0008094 ATP-dependent activity, acting on DNA IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0016579 protein deubiquitination IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0019783 ubiquitin-like protein peptidase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0043531 ADP binding IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0070646 protein modification by small protein removal IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0101005 deubiquitinase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP Lactuca Sativa GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_rpt 732 760
IPR002885 Pentatricopeptide_rpt 664 685
IPR002885 Pentatricopeptide_rpt 160 189
IPR002885 Pentatricopeptide_rpt 771 790
IPR002885 Pentatricopeptide_rpt 863 910
IPR002885 Pentatricopeptide_rpt 593 638
IPR002885 Pentatricopeptide_rpt 398 447
IPR002885 Pentatricopeptide_rpt 979 1027
No external refs found!