Lsat_1_v5_gn_2_87921.1 (APG6, AtCLPB3, CLPB3, CLPB-P)

Aliases : APG6, AtCLPB3, CLPB3, CLPB-P

Description : organellar chaperone *(Clp-p/Clp-m)

Gene families : OG0008826 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_2_87921.1
Cluster	Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm): Cluster_223

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0016887	ATP hydrolysis activity	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0003723	RNA binding	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0004134	4-alpha-glucanotransferase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006298	mismatch repair	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0030983	mismatched DNA binding	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0031072	heat shock protein binding	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0046422	violaxanthin de-epoxidase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0051082	unfolded protein binding	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:2001070	starch binding	IEP	Lactuca Sativa GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR004176	Clp_R_dom	104	153
IPR004176	Clp_R_dom	179	230
IPR041546	ClpA/ClpB_AAA_lid	427	529
IPR003959	ATPase_AAA_core	288	420
IPR003959	ATPase_AAA_core	685	853
IPR019489	Clp_ATPase_C	860	940

External Links

No external refs found!