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  5. Lsat_1_v5_gn_2_76200.1

Lsat_1_v5_gn_2_76200.1 (CHR1, DDM1, SOM4,...)


Aliases : CHR1, DDM1, SOM4, CHA1, SOM1, CHR01, ATDDM1

Description : chromatin remodeling factor *(DDM1)


Gene families : OG0018175 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_2_76200.1
Cluster Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm): Cluster_50


Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0140658 ATP-dependent chromatin remodeler activity IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000776 kinetochore IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0003676 nucleic acid binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0003677 DNA binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0003682 chromatin binding IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0005750 mitochondrial respiratory chain complex III IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006139 nucleobase-containing compound metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006259 DNA metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006260 DNA replication IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006269 DNA replication, synthesis of RNA primer IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006275 regulation of DNA replication IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006310 DNA recombination IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006725 cellular aromatic compound metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0007034 vacuolar transport IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0008285 negative regulation of cell population proliferation IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0008608 attachment of spindle microtubules to kinetochore IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0009262 deoxyribonucleotide metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0009263 deoxyribonucleotide biosynthetic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0022402 cell cycle process IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0031262 Ndc80 complex IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0032392 DNA geometric change IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0032508 DNA duplex unwinding IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0042127 regulation of cell population proliferation IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0045275 respiratory chain complex III IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0046483 heterocycle metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0051052 regulation of DNA metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0051315 attachment of mitotic spindle microtubules to kinetochore IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0070069 cytochrome complex IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0070469 respirasome IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0098803 respiratory chain complex IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0099080 supramolecular complex IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0180019 Knl1/Spc105 complex IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:1902495 transmembrane transporter complex IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:1903047 mitotic cell cycle process IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:1990351 transporter complex IEP Lactuca Sativa GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR001650 Helicase_C 521 634
IPR000330 SNF2_N 204 498
No external refs found!