1. Home
  2. Species
  3. Lactuca sativa
  4. Sequence
  5. Lsat_1_v5_gn_2_66680.1

Lsat_1_v5_gn_2_66680.1 (ATG13B)


Aliases : ATG13B

Description : accessory component *(ATG13) of ATG1-13 autophagosome assembly control complex


Gene families : OG0044289 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_2_66680.1
Cluster Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm): Cluster_234


Type GO Term Name Evidence Source
BP GO:0006914 autophagy IEA Interproscan
CC GO:1990316 Atg1/ULK1 kinase complex IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006401 RNA catabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006402 mRNA catabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0008037 cell recognition IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0009890 negative regulation of biosynthetic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0009892 negative regulation of metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0010558 negative regulation of macromolecule biosynthetic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0010629 negative regulation of gene expression IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0016197 endosomal transport IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0016226 iron-sulfur cluster assembly IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0016482 cytosolic transport IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0019439 aromatic compound catabolic process IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0030906 retromer, cargo-selective complex IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0031082 BLOC complex IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0031083 BLOC-1 complex IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0031163 metallo-sulfur cluster assembly IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0031324 negative regulation of cellular metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0031327 negative regulation of cellular biosynthetic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0034655 nucleobase-containing compound catabolic process IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0035673 oligopeptide transmembrane transporter activity IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0042147 retrograde transport, endosome to Golgi IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0042887 amide transmembrane transporter activity IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0044270 cellular nitrogen compound catabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0046700 heterocycle catabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0048544 recognition of pollen IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:1901361 organic cyclic compound catabolic process IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:1904680 peptide transmembrane transporter activity IEP Lactuca Sativa GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR018731 Atg13_N 16 259
No external refs found!