Lsat_1_v5_gn_2_63540.1

Description : plant-specific E3 ubiquitin ligase *(RSL/RFA)

Gene families : OG0017906 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_2_63540.1
Cluster	Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm): Cluster_106

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004518	nuclease activity	None	Extended
MF	GO:0004519	endonuclease activity	None	Extended
MF	GO:0004521	RNA endonuclease activity	None	Extended
MF	GO:0004523	RNA-DNA hybrid ribonuclease activity	IEA	Interproscan
MF	GO:0004540	RNA nuclease activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016788	hydrolase activity, acting on ester bonds	None	Extended
MF	GO:0016891	RNA endonuclease activity, producing 5'-phosphomonoesters	None	Extended
MF	GO:0016893	endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	IEA	Interproscan
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0005215	transporter activity	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006790	sulfur compound metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0016226	iron-sulfur cluster assembly	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016746	acyltransferase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0022857	transmembrane transporter activity	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0031163	metallo-sulfur cluster assembly	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0055085	transmembrane transport	IEP	Lactuca Sativa GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR002867	IBR_dom	269	329
IPR002156	RNaseH_domain	74	172
IPR018957	Znf_C3HC4_RING-type	201	245

External Links

No external refs found!