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  5. Lsat_1_v5_gn_2_111060.1

Lsat_1_v5_gn_2_111060.1 (HMGB3, NFD03, NFD3)


Aliases : HMGB3, NFD03, NFD3

Description : DNA bending architectural protein *(HMG-B)


Gene families : OG0000318 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0000318_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_2_111060.1
Cluster Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm): Cluster_60

Target Alias Description ECC score Gene Family Method Actions
Lsat_1_v5_gn_9_46521.1 HMGB3, NFD03, NFD3 DNA bending architectural protein *(HMG-B) 0.03 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004375 glycine dehydrogenase (decarboxylating) activity IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006544 glycine metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006546 glycine catabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006835 dicarboxylic acid transport IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0009063 amino acid catabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0009069 serine family amino acid metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0009071 serine family amino acid catabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0015740 C4-dicarboxylate transport IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0015743 malate transport IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0016054 organic acid catabolic process IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0016168 chlorophyll binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0016642 oxidoreductase activity, acting on the CH-NH2 group of donors, disulfide as acceptor IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0031012 extracellular matrix IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0044282 small molecule catabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0046395 carboxylic acid catabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:1901606 alpha-amino acid catabolic process IEP Lactuca Sativa GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR009071 HMG_box_dom 35 104
No external refs found!