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  5. Lsat_1_v5_gn_1_91840.1

Lsat_1_v5_gn_1_91840.1 (RLM3, TN16)


Aliases : RLM3, TN16

Description : effector receptor *(NLR)


Gene families : OG0000030 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0000030_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_1_91840.1
Cluster Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm): Cluster_228

Target Alias Description ECC score Gene Family Method Actions
Lsat_1_v5_gn_1_101960.1 RPP4, CHS2 not classified 0.02 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Lsat_1_v5_gn_1_102120.1 BURNOUT1 effector receptor *(NLR) 0.02 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Lsat_1_v5_gn_1_80040.1 RLM3, TN16 effector receptor *(NLR) 0.02 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Lsat_1_v5_gn_1_91880.1 RPP4, CHS2 effector receptor *(NLR) 0.03 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Lsat_1_v5_gn_1_92120.1 CYP71A27 effector receptor *(NLR) 0.02 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Lsat_1_v5_gn_1_93520.1 No alias effector receptor *(NLR) 0.03 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Lsat_1_v5_gn_1_94401.1 RLM3, TN16 effector receptor *(NLR) 0.02 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Lsat_1_v5_gn_1_94481.1 No alias effector receptor *(NLR) 0.03 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Lsat_1_v5_gn_1_98941.1 No alias effector receptor *(NLR) 0.03 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type GO Term Name Evidence Source
BP GO:0007165 signal transduction IEA Interproscan
MF GO:0043531 ADP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000272 polysaccharide catabolic process IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0003676 nucleic acid binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0004386 helicase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0004525 ribonuclease III activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0005515 protein binding IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0005991 trehalose metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0005992 trehalose biosynthetic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0007062 sister chromatid cohesion IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0007064 mitotic sister chromatid cohesion IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0009312 oligosaccharide biosynthetic process IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0016160 amylase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0016161 beta-amylase activity IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0022402 cell cycle process IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0031072 heat shock protein binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0031267 small GTPase binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0046351 disaccharide biosynthetic process IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0051020 GTPase binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP Lactuca Sativa GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR045344 C-JID 998 1128
IPR000157 TIR_dom 36 209
IPR002182 NB-ARC 224 454
No external refs found!