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  5. Lsat_1_v5_gn_1_83640.1

Lsat_1_v5_gn_1_83640.1 (EIF4G, CUM2)


Aliases : EIF4G, CUM2

Description : component *(eIF4G) of eIF4F mRNA unwinding complex


Gene families : OG0000482 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0000482_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_1_83640.1
Cluster Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm): Cluster_237

Target Alias Description ECC score Gene Family Method Actions
Lsat_1_v5_gn_4_34080.1 No alias not classified 0.02 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0000375 RNA splicing, via transesterification reactions IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0000398 mRNA splicing, via spliceosome IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0000491 small nucleolar ribonucleoprotein complex assembly IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0000492 box C/D snoRNP assembly IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0003684 damaged DNA binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0003724 RNA helicase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0003916 DNA topoisomerase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0003917 DNA topoisomerase type I (single strand cut, ATP-independent) activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0004379 glycylpeptide N-tetradecanoyltransferase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0004386 helicase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0004518 nuclease activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0004527 exonuclease activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0004832 valine-tRNA ligase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0004843 cysteine-type deubiquitinase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0005049 nuclear export signal receptor activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0005524 ATP binding IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0005643 nuclear pore IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0005737 cytoplasm IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006082 organic acid metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006139 nucleobase-containing compound metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006265 DNA topological change IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006289 nucleotide-excision repair IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006396 RNA processing IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006397 mRNA processing IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006399 tRNA metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006401 RNA catabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006402 mRNA catabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006418 tRNA aminoacylation for protein translation IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006438 valyl-tRNA aminoacylation IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006520 amino acid metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006606 protein import into nucleus IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006725 cellular aromatic compound metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006807 nitrogen compound metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006886 intracellular protein transport IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006913 nucleocytoplasmic transport IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0008094 ATP-dependent activity, acting on DNA IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0008104 protein localization IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0008186 ATP-dependent activity, acting on RNA IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0009057 macromolecule catabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0009890 negative regulation of biosynthetic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0009892 negative regulation of metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0009987 cellular process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0010498 proteasomal protein catabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0010558 negative regulation of macromolecule biosynthetic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0010629 negative regulation of gene expression IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0015031 protein transport IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0016070 RNA metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0016071 mRNA metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0016579 protein deubiquitination IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0016787 hydrolase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0016874 ligase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0017076 purine nucleotide binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0019107 myristoyltransferase activity IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0019752 carboxylic acid metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0019783 ubiquitin-like protein peptidase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0019899 enzyme binding IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0022618 protein-RNA complex assembly IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0030163 protein catabolic process IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0030554 adenyl nucleotide binding IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0031011 Ino80 complex IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0031267 small GTPase binding IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0031324 negative regulation of cellular metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0031327 negative regulation of cellular biosynthetic process IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0032553 ribonucleotide binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0032555 purine ribonucleotide binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0032559 adenyl ribonucleotide binding IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0033036 macromolecule localization IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0033365 protein localization to organelle IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0034504 protein localization to nucleus IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0034641 cellular nitrogen compound metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0034655 nucleobase-containing compound catabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0034660 ncRNA metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0036094 small molecule binding IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0043038 amino acid activation IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0043039 tRNA aminoacylation IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0043167 ion binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0043168 anion binding IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0043170 macromolecule metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0043436 oxoacid metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0044237 cellular metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0044281 small molecule metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0045184 establishment of protein localization IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0046483 heterocycle metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0046907 intracellular transport IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0051020 GTPase binding IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0051169 nuclear transport IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0051170 import into nucleus IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0051641 cellular localization IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0051649 establishment of localization in cell IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0061608 nuclear import signal receptor activity IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0070603 SWI/SNF superfamily-type complex IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0070646 protein modification by small protein removal IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0070647 protein modification by small protein conjugation or removal IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0070727 cellular macromolecule localization IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0071702 organic substance transport IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0071705 nitrogen compound transport IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0071826 protein-RNA complex organization IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0072594 establishment of protein localization to organelle IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0090304 nucleic acid metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0097346 INO80-type complex IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0097367 carbohydrate derivative binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0101005 deubiquitinase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0140097 catalytic activity, acting on DNA IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0140098 catalytic activity, acting on RNA IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0140101 catalytic activity, acting on a tRNA IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0140104 molecular carrier activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0140142 nucleocytoplasmic carrier activity IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0140513 nuclear protein-containing complex IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0140657 ATP-dependent activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:1901265 nucleoside phosphate binding IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:1901360 organic cyclic compound metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:1904949 ATPase complex IEP Lactuca Sativa GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR003891 Initiation_fac_eIF4g_MI 1377 1486
IPR003890 MIF4G-like_typ-3 972 1199
No external refs found!