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  5. Lsat_1_v5_gn_1_34101.1

Lsat_1_v5_gn_1_34101.1 (AAA1, FTR, KTN1,...)


Aliases : AAA1, FTR, KTN1, ERH3, ATKTN1, KATANIN, FRA2, LUE1, BOT1, FRC4, FRC2

Description : catalytic component of Katanin ATP-dependent microtubule severing complex. EC_3.6 hydrolase acting on acid anhydride


Gene families : OG0009492 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_1_34101.1
Cluster Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm): Cluster_203


Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0016887 ATP hydrolysis activity IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0001510 RNA methylation IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0001522 pseudouridine synthesis IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0005507 copper ion binding IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006400 tRNA modification IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0008033 tRNA processing IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0008173 RNA methyltransferase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0008175 tRNA methyltransferase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0009451 RNA modification IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0009982 pseudouridine synthase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0016426 tRNA (adenine) methyltransferase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0016429 tRNA (adenine-N1-)-methyltransferase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0016717 oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0016866 intramolecular transferase activity IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0030488 tRNA methylation IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0031515 tRNA (m1A) methyltransferase complex IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0034708 methyltransferase complex IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0043414 macromolecule methylation IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0043527 tRNA methyltransferase complex IEP Lactuca Sativa GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR003959 ATPase_AAA_core 280 417
IPR041569 AAA_lid_3 439 481
No external refs found!