Lsat_1_v5_gn_1_27300.1 (ATU2AF65A)

Aliases : ATU2AF65A

Description : not classified

Gene families : OG0000482 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0000482_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_1_27300.1
Cluster	Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm): Cluster_49

Target	Alias	Description	ECC score	Gene Family Method	Actions
Lsat_1_v5_gn_5_8501.1	No alias	not classified	0.02	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
BP	GO:0006508	proteolysis	None	Extended
BP	GO:0006511	ubiquitin-dependent protein catabolic process	IEA	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019899	enzyme binding	None	Extended
BP	GO:0019941	modification-dependent protein catabolic process	None	Extended
MF	GO:0031625	ubiquitin protein ligase binding	IEA	Interproscan
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043632	modification-dependent macromolecule catabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
MF	GO:0044389	ubiquitin-like protein ligase binding	None	Extended
BP	GO:0051603	proteolysis involved in protein catabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000375	RNA splicing, via transesterification reactions	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0000398	mRNA splicing, via spliceosome	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0003729	mRNA binding	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0004402	histone acetyltransferase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0005685	U1 snRNP	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006376	mRNA splice site recognition	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006473	protein acetylation	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006475	internal protein amino acid acetylation	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0008080	N-acetyltransferase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0008380	RNA splicing	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016410	N-acyltransferase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0016573	histone acetylation	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016624	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016903	oxidoreductase activity, acting on the aldehyde or oxo group of donors	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0018393	internal peptidyl-lysine acetylation	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0018394	peptidyl-lysine acetylation	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0022618	protein-RNA complex assembly	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0030532	small nuclear ribonucleoprotein complex	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0031012	extracellular matrix	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0034212	peptide N-acetyltransferase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0043543	protein acylation	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0048364	root development	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0048367	shoot system development	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0048731	system development	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0061733	peptide-lysine-N-acetyltransferase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0071826	protein-RNA complex organization	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0097525	spliceosomal snRNP complex	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0099402	plant organ development	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0120114	Sm-like protein family complex	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0140993	histone modifying activity	IEP	Lactuca Sativa GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR000504	RRM_dom	86	149
IPR001373	Cullin_N	2	56

External Links

No external refs found!

Lsat_1_v5_gn_1_27300.1 (ATU2AF65A)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation