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  5. Lsat_1_v5_gn_1_13321.1

Lsat_1_v5_gn_1_13321.1 (OTP87)


Aliases : OTP87

Description : RNA editing factor *(OTP87)


Gene families : OG0041343 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_1_13321.1
Cluster Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm): Cluster_104


Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0008270 zinc ion binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0034062 5'-3' RNA polymerase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0043167 ion binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0043169 cation binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0046872 metal ion binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0046914 transition metal ion binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0097747 RNA polymerase activity IEP Lactuca Sativa GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_rpt 621 649
IPR002885 Pentatricopeptide_rpt 226 253
IPR002885 Pentatricopeptide_rpt 596 616
IPR002885 Pentatricopeptide_rpt 299 324
IPR002885 Pentatricopeptide_rpt 792 816
IPR002885 Pentatricopeptide_rpt 397 419
IPR002885 Pentatricopeptide_rpt 426 456
IPR002885 Pentatricopeptide_rpt 524 552
IPR002885 Pentatricopeptide_rpt 716 764
IPR002885 Pentatricopeptide_rpt 325 372
IPR046848 E_motif 834 895
No external refs found!