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  5. Lsat_1_v5_gn_1_13300.1

Lsat_1_v5_gn_1_13300.1


Description : not classified


Gene families : OG0040764 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_1_13300.1
Cluster Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm): Cluster_104


Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0003676 nucleic acid binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0003677 DNA binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0004486 methylenetetrahydrofolate dehydrogenase [NAD(P)+] activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0004519 endonuclease activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0004521 RNA endonuclease activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0004525 ribonuclease III activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0004540 RNA nuclease activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0005488 binding IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0007165 signal transduction IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0008270 zinc ion binding IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0016070 RNA metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0016645 oxidoreductase activity, acting on the CH-NH group of donors IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0016646 oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0016891 RNA endonuclease activity, producing 5'-phosphomonoesters IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0032259 methylation IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0034062 5'-3' RNA polymerase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0043167 ion binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0043531 ADP binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0046914 transition metal ion binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0097159 organic cyclic compound binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0097747 RNA polymerase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0140098 catalytic activity, acting on RNA IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:1901363 heterocyclic compound binding IEP Lactuca Sativa GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_rpt 665 692
IPR002885 Pentatricopeptide_rpt 41 68
IPR002885 Pentatricopeptide_rpt 182 210
IPR002885 Pentatricopeptide_rpt 83 103
IPR002885 Pentatricopeptide_rpt 528 576
IPR002885 Pentatricopeptide_rpt 599 640
IPR002885 Pentatricopeptide_rpt 214 263
IPR002885 Pentatricopeptide_rpt 109 158
IPR002885 Pentatricopeptide_rpt 284 333
IPR002885 Pentatricopeptide_rpt 392 438
IPR002885 Pentatricopeptide_rpt 350 380
IPR002885 Pentatricopeptide_rpt 455 487
IPR002885 Pentatricopeptide_rpt 490 522
No external refs found!