Lsat_1_v5_gn_1_12220.1 (NRPB1, RNA_POL_II_LS,...)

Aliases : NRPB1, RNA_POL_II_LS, RPB1, RNA_POL_II_LSRNA_POL_II_LS

Description : component *(NRPB1) of RNA polymerase II complex

Gene families : OG0001009 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0001009_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_1_12220.1
Cluster	Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm): Cluster_199

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006351	DNA-templated transcription	IEA	Interproscan
BP	GO:0006366	transcription by RNA polymerase II	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016779	nucleotidyltransferase activity	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
MF	GO:0034062	5'-3' RNA polymerase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097747	RNA polymerase activity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003684	damaged DNA binding	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0003774	cytoskeletal motor activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0004315	3-oxoacyl-[acyl-carrier-protein] synthase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0004842	ubiquitin-protein transferase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0005515	protein binding	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0005643	nuclear pore	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0005681	spliceosomal complex	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006357	regulation of transcription by RNA polymerase II	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006913	nucleocytoplasmic transport	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0016592	mediator complex	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016746	acyltransferase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016887	ATP hydrolysis activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0017056	structural constituent of nuclear pore	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0031625	ubiquitin protein ligase binding	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0040008	regulation of growth	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0042393	histone binding	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0044389	ubiquitin-like protein ligase binding	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0045927	positive regulation of growth	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0051169	nuclear transport	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0140513	nuclear protein-containing complex	IEP	Lactuca Sativa GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR007081	RNA_pol_Rpb1_5	350	940
IPR007075	RNA_pol_Rpb1_6	416	600
IPR007073	RNA_pol_Rpb1_7	685	819
IPR007066	RNA_pol_Rpb1_3	49	212
IPR000684	RNA_pol_II_repeat_euk	1110	1123
IPR000684	RNA_pol_II_repeat_euk	1068	1081
IPR000684	RNA_pol_II_repeat_euk	1276	1289
IPR000684	RNA_pol_II_repeat_euk	1180	1193
IPR000684	RNA_pol_II_repeat_euk	1082	1095
IPR000684	RNA_pol_II_repeat_euk	1060	1074
IPR000684	RNA_pol_II_repeat_euk	1124	1137
IPR000684	RNA_pol_II_repeat_euk	1096	1109
IPR000684	RNA_pol_II_repeat_euk	1138	1151
IPR000684	RNA_pol_II_repeat_euk	1222	1235
IPR000684	RNA_pol_II_repeat_euk	1236	1249
IPR000684	RNA_pol_II_repeat_euk	1194	1207
IPR000684	RNA_pol_II_repeat_euk	1166	1179
IPR000684	RNA_pol_II_repeat_euk	1262	1275
IPR000684	RNA_pol_II_repeat_euk	1208	1221
IPR000684	RNA_pol_II_repeat_euk	1152	1165
IPR000722	RNA_pol_asu	1	45
IPR007083	RNA_pol_Rpb1_4	240	343

External Links

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Lsat_1_v5_gn_1_12220.1 (NRPB1, RNA_POL_II_LS,...)

Expression Profile

Co-expression Networks

Functional Annotation