Lsat_1_v5_gn_1_102000.1

Description : effector receptor *(NLR)

Gene families : OG0000030 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0000030_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_1_102000.1
Cluster	Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm): Cluster_84

Target	Alias	Description	ECC score	Gene Family Method
Lsat_1_v5_gn_1_80040.1	RLM3, TN16	effector receptor *(NLR)	0.04	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Lsat_1_v5_gn_1_93540.1	ALP2	not classified	0.04	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Lsat_1_v5_gn_1_93941.1	No alias	effector receptor *(NLR)	0.02	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Lsat_1_v5_gn_1_94481.1	No alias	effector receptor *(NLR)	0.07	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Lsat_1_v5_gn_8_155520.1	SIKIC2, RPP5	effector receptor *(NLR)	0.03	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
BP	GO:0007165	signal transduction	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0043531	ADP binding	IEA	Interproscan
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0004519	endonuclease activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0004521	RNA endonuclease activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0004525	ribonuclease III activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0004540	RNA nuclease activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0004652	obsolete polynucleotide adenylyltransferase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016891	RNA endonuclease activity, producing 5'-phosphomonoesters	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016893	endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0032296	double-stranded RNA-specific ribonuclease activity	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0043631	obsolete RNA polyadenylation	IEP	Lactuca Sativa GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR002182	NB-ARC	211	446
IPR000157	TIR_dom	22	196

External Links

No external refs found!