Lsat_1_v5_gn_0_41600.1 (RPOA)


Aliases : RPOA

Description : core component *(RpoA) of plastid-encoded RNA polymerase. translation initiation factor *(IF-1). component *(uS11c) of small plastid ribosomal-subunit proteome


Gene families : OG0001994 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0001994_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_0_41600.1
Cluster Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm): Cluster_140

Target Alias Description ECC score Gene Family Method Actions
Lsat_1_v5_gn_5_50401.1 RPOA core component *(RpoA) of plastid-encoded RNA polymerase 0.04 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_C0091.00036 RPOA core component *(RpoA) of plastid-encoded RNA polymerase 0.02 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_C0091.00037 RPOA core component *(RpoA) of plastid-encoded RNA polymerase 0.02 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0003735 structural constituent of ribosome IEA Interproscan
MF GO:0003743 translation initiation factor activity IEA Interproscan
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006351 DNA-templated transcription IEA Interproscan
BP GO:0006412 translation IEA Interproscan
BP GO:0006413 translational initiation IEA Interproscan
MF GO:0046983 protein dimerization activity IEA Interproscan
Type GO Term Name Evidence Source
BP GO:0006754 ATP biosynthetic process IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0008324 monoatomic cation transmembrane transporter activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0009055 electron transfer activity IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0009142 nucleoside triphosphate biosynthetic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0009145 purine nucleoside triphosphate biosynthetic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0009201 ribonucleoside triphosphate biosynthetic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0009206 purine ribonucleoside triphosphate biosynthetic process IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0009521 photosystem IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0009522 photosystem I IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0009523 photosystem II IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0009579 thylakoid IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0015075 monoatomic ion transmembrane transporter activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0015078 proton transmembrane transporter activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0015979 photosynthesis IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0015986 proton motive force-driven ATP synthesis IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0016020 membrane IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0019843 rRNA binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0022890 inorganic cation transmembrane transporter activity IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0032991 protein-containing complex IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0098796 membrane protein complex IEP Lactuca Sativa GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR011260 RNAP_asu_C 477 519
IPR001971 Ribosomal_uS11 115 223
IPR006196 RNA-binding_domain_S1_IF1 9 57
IPR011263 DNA-dir_RNA_pol_RpoA/D/Rpb3 251 439
IPR011262 DNA-dir_RNA_pol_insert 282 373
No external refs found!