Bra041120 (ATPA)

Aliases : ATPA

Description : subunit alpha of peripheral CF1 subcomplex of ATP synthase complex

Gene families : OG0000306 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0000306_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brassica rapa (Bra) PCC: Bra041120
Cluster	Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm): Cluster_48

Target	Alias	Description	ECC score	Gene Family Method
Lsat_1_v5_gn_0_28780.1	ATPA	subunit alpha of peripheral CF1 subcomplex of ATP...	0.04	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Lsat_1_v5_gn_1_38700.1	ATPA	subunit alpha of peripheral CF1 subcomplex of ATP...	0.04	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Lsat_1_v5_gn_1_88060.1	ATPA	subunit alpha of peripheral CF1 subcomplex of ATP...	0.04	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Lsat_1_v5_gn_5_110781.1	ATPA	not classified	0.01	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Lsat_1_v5_gn_8_122301.1	ATPA	subunit alpha of peripheral CF1 subcomplex of ATP...	0.04	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_C0091.00012	ATPA	subunit alpha of peripheral CF1 subcomplex of ATP...	0.05	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006163	purine nucleotide metabolic process	None	Extended
BP	GO:0006164	purine nucleotide biosynthetic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006753	nucleoside phosphate metabolic process	None	Extended
BP	GO:0006754	ATP biosynthetic process	None	Extended
BP	GO:0006793	phosphorus metabolic process	None	Extended
BP	GO:0006796	phosphate-containing compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0006811	monoatomic ion transport	None	Extended
BP	GO:0006812	monoatomic cation transport	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009117	nucleotide metabolic process	None	Extended
BP	GO:0009141	nucleoside triphosphate metabolic process	None	Extended
BP	GO:0009142	nucleoside triphosphate biosynthetic process	None	Extended
BP	GO:0009144	purine nucleoside triphosphate metabolic process	None	Extended
BP	GO:0009145	purine nucleoside triphosphate biosynthetic process	None	Extended
BP	GO:0009150	purine ribonucleotide metabolic process	None	Extended
BP	GO:0009152	purine ribonucleotide biosynthetic process	None	Extended
BP	GO:0009165	nucleotide biosynthetic process	None	Extended
BP	GO:0009199	ribonucleoside triphosphate metabolic process	None	Extended
BP	GO:0009201	ribonucleoside triphosphate biosynthetic process	None	Extended
BP	GO:0009205	purine ribonucleoside triphosphate metabolic process	None	Extended
BP	GO:0009206	purine ribonucleoside triphosphate biosynthetic process	None	Extended
BP	GO:0009259	ribonucleotide metabolic process	None	Extended
BP	GO:0009260	ribonucleotide biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015986	proton motive force-driven ATP synthesis	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0019637	organophosphate metabolic process	None	Extended
BP	GO:0019693	ribose phosphate metabolic process	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0034220	monoatomic ion transmembrane transport	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0046034	ATP metabolic process	IEA	Interproscan
BP	GO:0046390	ribose phosphate biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0055085	transmembrane transport	None	Extended
BP	GO:0055086	nucleobase-containing small molecule metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0072521	purine-containing compound metabolic process	None	Extended
BP	GO:0072522	purine-containing compound biosynthetic process	None	Extended
BP	GO:0090407	organophosphate biosynthetic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
BP	GO:0098655	monoatomic cation transmembrane transport	None	Extended
BP	GO:0098660	inorganic ion transmembrane transport	None	Extended
BP	GO:0098662	inorganic cation transmembrane transport	None	Extended
BP	GO:1901135	carbohydrate derivative metabolic process	None	Extended
BP	GO:1901137	carbohydrate derivative biosynthetic process	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901293	nucleoside phosphate biosynthetic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
BP	GO:1902600	proton transmembrane transport	IEA	Interproscan

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0006334	nucleosome assembly	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0008483	transaminase activity	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0009521	photosystem	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0009522	photosystem I	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0009579	thylakoid	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009767	photosynthetic electron transport chain	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0015977	carbon fixation	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0015979	photosynthesis	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016168	chlorophyll binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016651	oxidoreductase activity, acting on NAD(P)H	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016769	transferase activity, transferring nitrogenous groups	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016831	carboxy-lyase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016984	ribulose-bisphosphate carboxylase activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0019684	photosynthesis, light reaction	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0022900	electron transport chain	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0034357	photosynthetic membrane	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0034728	nucleosome organization	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0042651	thylakoid membrane	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0046872	metal ion binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0048038	quinone binding	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0065004	protein-DNA complex assembly	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0098796	membrane protein complex	IEP	Brassica rapa GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR000194	ATPase_F1/V1/A1_a/bsu_nucl-bd	150	365
IPR000793	ATP_synth_asu_C	372	496
IPR004100	ATPase_F1/V1/A1_a/bsu_N	27	93

External Links

No external refs found!

Bra041120 (ATPA)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation