Bra041106 (PETA)

Aliases : PETA

Description : apocytochrome f component *(PetA) of cytochrome b6/f complex

Gene families : OG0001102 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0001102_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brassica rapa (Bra) PCC: Bra041106
Cluster	Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm): Cluster_48

Target	Alias	Description	ECC score	Gene Family Method
Lsat_1_v5_gn_1_38720.1	PETA	apocytochrome f component *(PetA) of cytochrome b6/f complex	0.02	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Lsat_1_v5_gn_7_110220.1	PETA	apocytochrome f component *(PetA) of cytochrome b6/f complex	0.02	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_C0091.00040	PETA	apocytochrome f component *(PetA) of cytochrome b6/f...	0.02	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr1.01455	PETA	apocytochrome f component *(PetA) of cytochrome b6/f complex	0.03	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005506	iron ion binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0009055	electron transfer activity	IEA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015979	photosynthesis	IEA	Interproscan
CC	GO:0016020	membrane	None	Extended
MF	GO:0016491	oxidoreductase activity	None	Extended
MF	GO:0020037	heme binding	IEA	Interproscan
CC	GO:0034357	photosynthetic membrane	None	Extended
CC	GO:0042651	thylakoid membrane	IEA	Interproscan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046906	tetrapyrrole binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004652	obsolete polynucleotide adenylyltransferase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0005092	GDP-dissociation inhibitor activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0005094	Rho GDP-dissociation inhibitor activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006334	nucleosome assembly	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0007264	small GTPase mediated signal transduction	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0007265	Ras protein signal transduction	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0007266	Rho protein signal transduction	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0009521	photosystem	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0009522	photosystem I	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0009579	thylakoid	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009767	photosynthetic electron transport chain	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0015977	carbon fixation	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0015986	proton motive force-driven ATP synthesis	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016168	chlorophyll binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016651	oxidoreductase activity, acting on NAD(P)H	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016984	ribulose-bisphosphate carboxylase activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0019684	photosynthesis, light reaction	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0022900	electron transport chain	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0034728	nucleosome organization	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0043226	organelle	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0043228	non-membrane-bounded organelle	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0043229	intracellular organelle	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0043232	intracellular non-membrane-bounded organelle	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0043631	obsolete RNA polyadenylation	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0048038	quinone binding	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0065004	protein-DNA complex assembly	IEP	Brassica rapa GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR002325	Cyt_f	202	320
IPR024094	Cyt_f_lg_dom	36	190

External Links

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Bra041106 (PETA)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation