Bra040978 (RPOA)


Aliases : RPOA

Description : component *(uS11c) of small plastid ribosomal-subunit proteome. core component *(RpoA) of plastid-encoded RNA polymerase


Gene families : OG0001994 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0001994_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa (Bra) PCC: Bra040978
Cluster Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm): Cluster_6


Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003735 structural constituent of ribosome IEA Interproscan
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006351 DNA-templated transcription IEA Interproscan
BP GO:0006412 translation IEA Interproscan
MF GO:0046983 protein dimerization activity IEA Interproscan
Type GO Term Name Evidence Source
BP GO:0000154 rRNA modification IEP Brassica rapa GO terms from Neighborhoods
BP GO:0001510 RNA methylation IEP Brassica rapa GO terms from Neighborhoods
MF GO:0003700 DNA-binding transcription factor activity IEP Brassica rapa GO terms from Neighborhoods
CC GO:0005634 nucleus IEP Brassica rapa GO terms from Neighborhoods
MF GO:0008170 N-methyltransferase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0008649 rRNA methyltransferase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0016436 rRNA (uridine) methyltransferase activity IEP Brassica rapa GO terms from Neighborhoods
BP GO:0031167 rRNA methylation IEP Brassica rapa GO terms from Neighborhoods
CC GO:0043227 membrane-bounded organelle IEP Brassica rapa GO terms from Neighborhoods
CC GO:0043231 intracellular membrane-bounded organelle IEP Brassica rapa GO terms from Neighborhoods
MF GO:0070042 rRNA (uridine-N3-)-methyltransferase activity IEP Brassica rapa GO terms from Neighborhoods
BP GO:0070475 rRNA base methylation IEP Brassica rapa GO terms from Neighborhoods
MF GO:0140102 catalytic activity, acting on a rRNA IEP Brassica rapa GO terms from Neighborhoods
MF GO:0140110 transcription regulator activity IEP Brassica rapa GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR001971 Ribosomal_uS11 36 142
IPR011263 DNA-dir_RNA_pol_RpoA/D/Rpb3 170 361
IPR011262 DNA-dir_RNA_pol_insert 204 295
IPR011260 RNAP_asu_C 400 461
No external refs found!