Bra040197 (SDG31, SUVR4)

Aliases : SDG31, SUVR4

Description : component *(uL14) of large ribosomal-subunit (LSU) proteome. EC_2.1 transferase transferring one-carbon group. plasmodesmal protein *(PDLP). class-V histone methyltransferase *(Suv)

Gene families : OG0001620 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0001620_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brassica rapa (Bra) PCC: Bra040197
Cluster	Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm): Cluster_279

Target	Alias	Description	ECC score	Gene Family Method
Bra001104	SDG31, SUVR4	component *(uL14) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Bra030573	No alias	component *(uL14) of large ribosomal-subunit (LSU) proteome	0.04	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Lsat_1_v5_gn_9_11361.1	No alias	component *(uL14) of large ribosomal-subunit (LSU) proteome	0.01	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006479	protein methylation	None	Extended
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008213	protein alkylation	None	Extended
MF	GO:0008270	zinc ion binding	IEA	Interproscan
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016570	histone modification	None	Extended
BP	GO:0016571	histone methylation	None	Extended
BP	GO:0018022	peptidyl-lysine methylation	None	Extended
MF	GO:0018024	obsolete histone lysine N-methyltransferase activity	IEA	Interproscan
BP	GO:0018193	peptidyl-amino acid modification	None	Extended
BP	GO:0018205	peptidyl-lysine modification	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0032259	methylation	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034968	histone lysine methylation	IEA	Interproscan
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043414	macromolecule methylation	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0043687	post-translational protein modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000139	Golgi membrane	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0000275	mitochondrial proton-transporting ATP synthase complex, catalytic sector F(1)	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0002097	tRNA wobble base modification	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0002098	tRNA wobble uridine modification	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0004590	orotidine-5'-phosphate decarboxylase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0005338	nucleotide-sugar transmembrane transporter activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006206	pyrimidine nucleobase metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006207	'de novo' pyrimidine nucleobase biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006400	tRNA modification	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006754	ATP biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006810	transport	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0008033	tRNA processing	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009112	nucleobase metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009141	nucleoside triphosphate metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009142	nucleoside triphosphate biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009144	purine nucleoside triphosphate metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009145	purine nucleoside triphosphate biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009199	ribonucleoside triphosphate metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009201	ribonucleoside triphosphate biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009205	purine ribonucleoside triphosphate metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009206	purine ribonucleoside triphosphate biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0015165	pyrimidine nucleotide-sugar transmembrane transporter activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0015780	nucleotide-sugar transmembrane transport	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0015931	nucleobase-containing compound transport	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0015932	nucleobase-containing compound transmembrane transporter activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016831	carboxy-lyase activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0018130	heterocycle biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0019856	pyrimidine nucleobase biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0022804	active transmembrane transporter activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0032553	ribonucleotide binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0032555	purine ribonucleotide binding	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0033178	proton-transporting two-sector ATPase complex, catalytic domain	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0033588	elongator holoenzyme complex	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0044183	protein folding chaperone	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0045261	proton-transporting ATP synthase complex, catalytic core F(1)	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0046034	ATP metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0046112	nucleobase biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0051179	localization	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0051234	establishment of localization	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0055085	transmembrane transport	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0055086	nucleobase-containing small molecule metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0072527	pyrimidine-containing compound metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0072528	pyrimidine-containing compound biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0090481	pyrimidine nucleotide-sugar transmembrane transport	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0097367	carbohydrate derivative binding	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0098588	bounding membrane of organelle	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0098798	mitochondrial protein-containing complex	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0098800	inner mitochondrial membrane protein complex	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0140657	ATP-dependent activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0140662	ATP-dependent protein folding chaperone	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:1901264	carbohydrate derivative transport	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:1901505	carbohydrate derivative transmembrane transporter activity	IEP	Brassica rapa GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR002902	GNK2	68	145
IPR001214	SET_dom	638	758
IPR018848	WIYLD_domain	331	388
IPR007728	Pre-SET_dom	476	618
IPR000218	Ribosomal_uL14	824	942

External Links

No external refs found!

Bra040197 (SDG31, SUVR4)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation