Bra039042 (MDR1, ATMDR1, MDR11,...)

Aliases : MDR1, ATMDR1, MDR11, ATPGP19, PGP19, ABCB19, ATABCB19, ATMDR11

Description : auxin efflux transporter *(ABCB19). subfamily ABCB transporter

Gene families : OG0001540 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0001540_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brassica rapa (Bra) PCC: Bra039042
Cluster	Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm): Cluster_141

Target	Alias	Description	ECC score	Gene Family Method	Actions
Lsat_1_v5_gn_2_89101.1	MDR1, ATMDR1,...	auxin efflux transporter *(ABCB19). subfamily ABCB transporter	0.01	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005215	transporter activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0015399	primary active transmembrane transporter activity	None	Extended
CC	GO:0016020	membrane	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0022804	active transmembrane transporter activity	None	Extended
MF	GO:0022857	transmembrane transporter activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0042626	ATPase-coupled transmembrane transporter activity	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0055085	transmembrane transport	IEA	Interproscan
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140359	ABC-type transporter activity	IEA	Interproscan
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003743	translation initiation factor activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0003872	6-phosphofructokinase activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006090	pyruvate metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006096	glycolytic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006413	translational initiation	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0008443	phosphofructokinase activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009890	negative regulation of biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009892	negative regulation of metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0010558	negative regulation of macromolecule biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0010605	negative regulation of macromolecule metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0010629	negative regulation of gene expression	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0015098	molybdate ion transmembrane transporter activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0015103	inorganic anion transmembrane transporter activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0015689	molybdate ion transport	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0015698	inorganic anion transport	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0016052	carbohydrate catabolic process	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0019200	carbohydrate kinase activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0031047	regulatory ncRNA-mediated gene silencing	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0031324	negative regulation of cellular metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0031327	negative regulation of cellular biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0048519	negative regulation of biological process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0048523	negative regulation of cellular process	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:1901702	salt transmembrane transporter activity	IEP	Brassica rapa GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR003439	ABC_transporter-like_ATP-bd	1030	1177
IPR011527	ABC1_TM_dom	43	315
IPR011527	ABC1_TM_dom	688	959
IPR003439	ABC_transporter-like_ATP-bd	384	532

External Links

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Bra039042 (MDR1, ATMDR1, MDR11,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation