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  5. Bra038726

Bra038726 (HCHIB, PR-3, B-CHI,...)


Aliases : HCHIB, PR-3, B-CHI, ATHCHIB, PR3, CHI-B

Description : basic chitinase *(CHIB)


Gene families : OG0002760 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0002760_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa (Bra) PCC: Bra038726
Cluster Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm): Cluster_807

Target Alias Description ECC score Gene Family Method Actions
Bra034754 HCHIB, PR-3,... basic chitinase *(CHIB) 0.02 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type GO Term Name Evidence Source
MF GO:0004568 chitinase activity IEA Interproscan
BP GO:0006032 chitin catabolic process IEA Interproscan
MF GO:0008061 chitin binding IEA Interproscan
BP GO:0016998 cell wall macromolecule catabolic process IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005215 transporter activity IEP Brassica rapa GO terms from Neighborhoods
CC GO:0005575 cellular_component IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006810 transport IEP Brassica rapa GO terms from Neighborhoods
MF GO:0008107 galactoside 2-alpha-L-fucosyltransferase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0008417 fucosyltransferase activity IEP Brassica rapa GO terms from Neighborhoods
CC GO:0016020 membrane IEP Brassica rapa GO terms from Neighborhoods
MF GO:0022857 transmembrane transporter activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0031127 alpha-(1,2)-fucosyltransferase activity IEP Brassica rapa GO terms from Neighborhoods
BP GO:0042546 cell wall biogenesis IEP Brassica rapa GO terms from Neighborhoods
BP GO:0044085 cellular component biogenesis IEP Brassica rapa GO terms from Neighborhoods
BP GO:0051179 localization IEP Brassica rapa GO terms from Neighborhoods
BP GO:0051234 establishment of localization IEP Brassica rapa GO terms from Neighborhoods
BP GO:0055085 transmembrane transport IEP Brassica rapa GO terms from Neighborhoods
BP GO:0071554 cell wall organization or biogenesis IEP Brassica rapa GO terms from Neighborhoods
CC GO:0110165 cellular anatomical entity IEP Brassica rapa GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR001002 Chitin-bd_1 22 60
IPR000726 Glyco_hydro_19_cat 82 313
No external refs found!