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  5. Bra038515

Bra038515 (VIM1, ORTH2)


Aliases : VIM1, ORTH2

Description : regulatory E3 ubiquitin ligase (ORTH/VIM) of RNA-independent DNA methylation


Gene families : OG0007765 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa (Bra) PCC: Bra038515
Cluster Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm): Cluster_104


Type GO Term Name Evidence Source
MF GO:0046872 metal ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004602 glutathione peroxidase activity IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006950 response to stress IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006952 defense response IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006979 response to oxidative stress IEP Brassica rapa GO terms from Neighborhoods
BP GO:0008285 negative regulation of cell population proliferation IEP Brassica rapa GO terms from Neighborhoods
MF GO:0008430 selenium binding IEP Brassica rapa GO terms from Neighborhoods
MF GO:0016779 nucleotidyltransferase activity IEP Brassica rapa GO terms from Neighborhoods
BP GO:0042127 regulation of cell population proliferation IEP Brassica rapa GO terms from Neighborhoods
MF GO:0046914 transition metal ion binding IEP Brassica rapa GO terms from Neighborhoods
BP GO:0048519 negative regulation of biological process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0048523 negative regulation of cellular process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0050896 response to stimulus IEP Brassica rapa GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR003105 SRA_YDG 271 420
IPR027370 Znf-RING_euk 507 561
IPR018957 Znf_C3HC4_RING-type 140 179
No external refs found!