Bra034571 (STA1, EMB2770)

Aliases : STA1, EMB2770

Description : component *(PRPF6) of U5 snRNP complex

Gene families : OG0030850 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brassica rapa (Bra) PCC: Bra034571
Cluster	Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm): Cluster_14

Type	GO Term	Name	Evidence	Source
BP	GO:0000375	RNA splicing, via transesterification reactions	None	Extended
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	None	Extended
BP	GO:0000398	mRNA splicing, via spliceosome	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006397	mRNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008380	RNA splicing	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0004616	phosphogluconate dehydrogenase (decarboxylating) activity	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0005811	lipid droplet	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006098	pentose-phosphate shunt	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006739	NADP metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006740	NADPH regeneration	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0008146	sulfotransferase activity	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0012511	monolayer-surrounded lipid storage body	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016782	transferase activity, transferring sulphur-containing groups	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0019362	pyridine nucleotide metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0046496	nicotinamide nucleotide metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0051156	glucose 6-phosphate metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0072524	pyridine-containing compound metabolic process	IEP	Brassica rapa GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR010491	PRP1_N	91	231

External Links

No external refs found!