Bra032803 (RTL4, NFD2)

Aliases : RTL4, NFD2

Description : not classified

Gene families : OG0029568 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brassica rapa (Bra) PCC: Bra032803
Cluster	Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm): Cluster_278

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004518	nuclease activity	None	Extended
MF	GO:0004519	endonuclease activity	None	Extended
MF	GO:0004521	RNA endonuclease activity	None	Extended
MF	GO:0004525	ribonuclease III activity	IEA	Interproscan
MF	GO:0004540	RNA nuclease activity	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016788	hydrolase activity, acting on ester bonds	None	Extended
MF	GO:0016891	RNA endonuclease activity, producing 5'-phosphomonoesters	None	Extended
MF	GO:0016893	endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters	None	Extended
MF	GO:0032296	double-stranded RNA-specific ribonuclease activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000079	regulation of cyclin-dependent protein serine/threonine kinase activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0001932	regulation of protein phosphorylation	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0003684	damaged DNA binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0004470	malic enzyme activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0004471	malate dehydrogenase (decarboxylating) (NAD+) activity	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0005576	extracellular region	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0005618	cell wall	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0005634	nucleus	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006073	obsolete cellular glucan metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006281	DNA repair	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006289	nucleotide-excision repair	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006479	protein methylation	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0008213	protein alkylation	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0010498	proteasomal protein catabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0016570	histone modification	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0016571	histone methylation	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016615	malate dehydrogenase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016651	oxidoreductase activity, acting on NAD(P)H	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016762	xyloglucan:xyloglucosyl transferase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016872	intramolecular lyase activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0018022	peptidyl-lysine methylation	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0018024	obsolete histone lysine N-methyltransferase activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0018193	peptidyl-amino acid modification	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0018205	peptidyl-lysine modification	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0019220	regulation of phosphate metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0019899	enzyme binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0019900	kinase binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0019901	protein kinase binding	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0030163	protein catabolic process	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0030312	external encapsulating structure	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0031399	regulation of protein modification process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0032259	methylation	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0034968	histone lysine methylation	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0042325	regulation of phosphorylation	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0043161	proteasome-mediated ubiquitin-dependent protein catabolic process	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0043227	membrane-bounded organelle	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0043414	macromolecule methylation	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0043549	regulation of kinase activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0045859	regulation of protein kinase activity	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0048046	apoplast	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0050790	regulation of catalytic activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0050896	response to stimulus	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0051174	regulation of phosphorus metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0051246	regulation of protein metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0051287	NAD binding	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0051338	regulation of transferase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0051536	iron-sulfur cluster binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0051540	metal cluster binding	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0051726	regulation of cell cycle	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0065009	regulation of molecular function	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0071900	regulation of protein serine/threonine kinase activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:1901565	organonitrogen compound catabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:1904029	regulation of cyclin-dependent protein kinase activity	IEP	Brassica rapa GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR000999	RNase_III_dom	36	142

External Links

No external refs found!

Bra032803 (RTL4, NFD2)

Expression Profile

Co-expression Networks

Functional Annotation