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  5. Bra031285

Bra031285


Description : not classified


Gene families : OG0000623 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0000623_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa (Bra) PCC: Bra031285
Cluster Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm): Cluster_256

Target Alias Description ECC score Gene Family Method Actions
Bra022363 No alias not classified 0.03 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP Brassica rapa GO terms from Neighborhoods
CC GO:0000152 nuclear ubiquitin ligase complex IEP Brassica rapa GO terms from Neighborhoods
CC GO:0005680 anaphase-promoting complex IEP Brassica rapa GO terms from Neighborhoods
CC GO:0005759 mitochondrial matrix IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006553 lysine metabolic process IEP Brassica rapa GO terms from Neighborhoods
MF GO:0008270 zinc ion binding IEP Brassica rapa GO terms from Neighborhoods
MF GO:0008837 diaminopimelate epimerase activity IEP Brassica rapa GO terms from Neighborhoods
BP GO:0009066 aspartate family amino acid metabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0009067 aspartate family amino acid biosynthetic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0009085 lysine biosynthetic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0009089 lysine biosynthetic process via diaminopimelate IEP Brassica rapa GO terms from Neighborhoods
MF GO:0016854 racemase and epimerase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0016855 racemase and epimerase activity, acting on amino acids and derivatives IEP Brassica rapa GO terms from Neighborhoods
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP Brassica rapa GO terms from Neighborhoods
CC GO:0031974 membrane-enclosed lumen IEP Brassica rapa GO terms from Neighborhoods
MF GO:0036361 racemase activity, acting on amino acids and derivatives IEP Brassica rapa GO terms from Neighborhoods
MF GO:0043167 ion binding IEP Brassica rapa GO terms from Neighborhoods
MF GO:0043169 cation binding IEP Brassica rapa GO terms from Neighborhoods
CC GO:0043233 organelle lumen IEP Brassica rapa GO terms from Neighborhoods
BP GO:0043648 dicarboxylic acid metabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0046451 diaminopimelate metabolic process IEP Brassica rapa GO terms from Neighborhoods
MF GO:0046872 metal ion binding IEP Brassica rapa GO terms from Neighborhoods
MF GO:0046914 transition metal ion binding IEP Brassica rapa GO terms from Neighborhoods
MF GO:0047661 amino-acid racemase activity IEP Brassica rapa GO terms from Neighborhoods
CC GO:0070013 intracellular organelle lumen IEP Brassica rapa GO terms from Neighborhoods
BP GO:1901607 alpha-amino acid biosynthetic process IEP Brassica rapa GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_rpt 391 446
IPR046848 E_motif 450 512
IPR002885 Pentatricopeptide_rpt 232 279
IPR002885 Pentatricopeptide_rpt 333 379
IPR002885 Pentatricopeptide_rpt 108 136
IPR002885 Pentatricopeptide_rpt 79 106
IPR002885 Pentatricopeptide_rpt 307 329
IPR002885 Pentatricopeptide_rpt 139 164
IPR002885 Pentatricopeptide_rpt 204 231
IPR002885 Pentatricopeptide_rpt 174 201
No external refs found!