Bra030845 (CLC-F, ATCLC-F, CLCF)

Aliases : CLC-F, ATCLC-F, CLCF

Description : anion channel / anion:proton antiporter *(CLC)

Gene families : OG0012884 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brassica rapa (Bra) PCC: Bra030845
Cluster	Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm): Cluster_119

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005215	transporter activity	None	Extended
MF	GO:0005216	monoatomic ion channel activity	None	Extended
MF	GO:0005244	voltage-gated monoatomic ion channel activity	None	Extended
MF	GO:0005247	voltage-gated chloride channel activity	IEA	Interproscan
MF	GO:0005253	monoatomic anion channel activity	None	Extended
MF	GO:0005254	chloride channel activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0006811	monoatomic ion transport	None	Extended
BP	GO:0006820	monoatomic anion transport	None	Extended
BP	GO:0006821	chloride transport	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
MF	GO:0008308	voltage-gated monoatomic anion channel activity	None	Extended
MF	GO:0008509	monoatomic anion transmembrane transporter activity	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0015075	monoatomic ion transmembrane transporter activity	None	Extended
MF	GO:0015103	inorganic anion transmembrane transporter activity	None	Extended
MF	GO:0015108	chloride transmembrane transporter activity	None	Extended
MF	GO:0015267	channel activity	None	Extended
MF	GO:0015318	inorganic molecular entity transmembrane transporter activity	None	Extended
BP	GO:0015698	inorganic anion transport	None	Extended
CC	GO:0016020	membrane	IEA	Interproscan
MF	GO:0022803	passive transmembrane transporter activity	None	Extended
MF	GO:0022832	voltage-gated channel activity	None	Extended
MF	GO:0022836	gated channel activity	None	Extended
MF	GO:0022839	monoatomic ion gated channel activity	None	Extended
MF	GO:0022857	transmembrane transporter activity	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0055085	transmembrane transport	IEA	Interproscan
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901702	salt transmembrane transporter activity	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000123	histone acetyltransferase complex	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0000124	SAGA complex	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0000166	nucleotide binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0003712	transcription coregulator activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0003713	transcription coactivator activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0003824	catalytic activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0004842	ubiquitin-protein transferase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0005488	binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0005515	protein binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0005524	ATP binding	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0005643	nuclear pore	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006366	transcription by RNA polymerase II	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006405	RNA export from nucleus	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006406	mRNA export from nucleus	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006807	nitrogen compound metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006913	nucleocytoplasmic transport	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0008152	metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009891	positive regulation of biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009893	positive regulation of metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0010557	positive regulation of macromolecule biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0010604	positive regulation of macromolecule metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0015931	nucleobase-containing compound transport	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0016197	endosomal transport	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016301	kinase activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0016482	cytosolic transport	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016740	transferase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016746	acyltransferase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016755	aminoacyltransferase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0017076	purine nucleotide binding	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0019538	protein metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0019787	ubiquitin-like protein transferase activity	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0030906	retromer, cargo-selective complex	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0031248	protein acetyltransferase complex	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0031325	positive regulation of cellular metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0031328	positive regulation of cellular biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0031625	ubiquitin protein ligase binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0032553	ribonucleotide binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0032555	purine ribonucleotide binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0032559	adenyl ribonucleotide binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0034062	5'-3' RNA polymerase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0036094	small molecule binding	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0042147	retrograde transport, endosome to Golgi	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0043168	anion binding	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0043170	macromolecule metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0044238	primary metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0044389	ubiquitin-like protein ligase binding	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0045893	positive regulation of DNA-templated transcription	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0045935	positive regulation of nucleobase-containing compound metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0046907	intracellular transport	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0048518	positive regulation of biological process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0048522	positive regulation of cellular process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0050657	nucleic acid transport	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0050658	RNA transport	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0051028	mRNA transport	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0051168	nuclear export	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0051169	nuclear transport	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0051236	establishment of RNA localization	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0051254	positive regulation of RNA metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0051641	cellular localization	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0051649	establishment of localization in cell	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0070461	SAGA-type complex	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0071702	organic substance transport	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0071704	organic substance metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0071705	nitrogen compound transport	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0097367	carbohydrate derivative binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0097747	RNA polymerase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0140096	catalytic activity, acting on a protein	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:1901265	nucleoside phosphate binding	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:1902493	acetyltransferase complex	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:1902680	positive regulation of RNA biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:1905368	peptidase complex	IEP	Brassica rapa GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR000644	CBS_dom	678	740
IPR000644	CBS_dom	612	664
IPR001807	Cl-channel_volt-gated	210	539

External Links

No external refs found!

Bra030845 (CLC-F, ATCLC-F, CLCF)

Expression Profile

Co-expression Networks

Functional Annotation