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  5. Bra030510

Bra030510 (PG45, PGA4)


Aliases : PG45, PGA4

Description : EC_3.2 glycosylase


Gene families : OG0003016 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0003016_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa (Bra) PCC: Bra030510
Cluster Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm): Cluster_292


Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEA Interproscan
BP GO:0005975 carbohydrate metabolic process IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000154 rRNA modification IEP Brassica rapa GO terms from Neighborhoods
BP GO:0001510 RNA methylation IEP Brassica rapa GO terms from Neighborhoods
MF GO:0004356 glutamine synthetase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0008170 N-methyltransferase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0008649 rRNA methyltransferase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0016211 ammonia ligase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0016436 rRNA (uridine) methyltransferase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0016837 carbon-oxygen lyase activity, acting on polysaccharides IEP Brassica rapa GO terms from Neighborhoods
MF GO:0016880 acid-ammonia (or amide) ligase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0030570 pectate lyase activity IEP Brassica rapa GO terms from Neighborhoods
BP GO:0031167 rRNA methylation IEP Brassica rapa GO terms from Neighborhoods
MF GO:0070042 rRNA (uridine-N3-)-methyltransferase activity IEP Brassica rapa GO terms from Neighborhoods
BP GO:0070475 rRNA base methylation IEP Brassica rapa GO terms from Neighborhoods
MF GO:0140102 catalytic activity, acting on a rRNA IEP Brassica rapa GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR000743 Glyco_hydro_28 78 386
No external refs found!