Bra028725 (TFIID-1, TBP1)

Aliases : TFIID-1, TBP1

Description : TATA-box-binding component of TFIId basal transcription regulation complex. TATA-box-binding protein of RNA polymerase III-dependent transcription

Gene families : OG0000620 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0000620_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brassica rapa (Bra) PCC: Bra028725
Cluster	Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm): Cluster_68

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006352	DNA-templated transcription initiation	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000723	telomere maintenance	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0000781	chromosome, telomeric region	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0003697	single-stranded DNA binding	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0032200	telomere organization	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0042162	telomeric DNA binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0043047	single-stranded telomeric DNA binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0043565	sequence-specific DNA binding	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0051276	chromosome organization	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0098687	chromosomal region	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0098847	sequence-specific single stranded DNA binding	IEP	Brassica rapa GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR000814	TBP	113	197
IPR000814	TBP	24	105

External Links

No external refs found!

Bra028725 (TFIID-1, TBP1)

Expression Profile

Co-expression Networks

Functional Annotation