Bra028577 (HBS1, SKI7)

Aliases : HBS1, SKI7

Description : GTPase component *(HBS1/SPL33/SKI7) of DOM34-HBS1 aberrant mRNA detection complex. associated EXO9 interaction GTPase *(SKI7)

Gene families : OG0007231 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brassica rapa (Bra) PCC: Bra028577
Cluster	Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm): Cluster_154

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003924	GTPase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005525	GTP binding	IEA	Interproscan
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	None	Extended
MF	GO:0019001	guanyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032561	guanyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0003723	RNA binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0003743	translation initiation factor activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0004843	cysteine-type deubiquitinase activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006413	translational initiation	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0008135	translation factor activity, RNA binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0010181	FMN binding	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0016579	protein deubiquitination	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0018024	obsolete histone lysine N-methyltransferase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0019783	ubiquitin-like protein peptidase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0019899	enzyme binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0031267	small GTPase binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0045182	translation regulator activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0051020	GTPase binding	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0070646	protein modification by small protein removal	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0090079	translation regulator activity, nucleic acid binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0101005	deubiquitinase activity	IEP	Brassica rapa GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR004161	EFTu-like_2	551	613
IPR004160	Transl_elong_EFTu/EF1A_C	619	726
IPR000795	T_Tr_GTP-bd_dom	304	519

External Links

No external refs found!