Bra028221 (TAP2, ATTAP2, ABCB27,...)

Aliases : TAP2, ATTAP2, ABCB27, AtALS1, ALS1

Description : subfamily ABCB transporter

Gene families : OG0003295 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0003295_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brassica rapa (Bra) PCC: Bra028221
Cluster	Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm): Cluster_89

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005215	transporter activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0015399	primary active transmembrane transporter activity	None	Extended
CC	GO:0016020	membrane	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0022804	active transmembrane transporter activity	None	Extended
MF	GO:0022857	transmembrane transporter activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0042626	ATPase-coupled transmembrane transporter activity	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0055085	transmembrane transport	IEA	Interproscan
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140359	ABC-type transporter activity	IEA	Interproscan
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0002097	tRNA wobble base modification	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0002100	tRNA wobble adenosine to inosine editing	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0004000	adenosine deaminase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0004527	exonuclease activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0004529	DNA exonuclease activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0004536	DNA nuclease activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006382	adenosine to inosine editing	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006400	tRNA modification	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0007165	signal transduction	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0008033	tRNA processing	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0008146	sulfotransferase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0008251	tRNA-specific adenosine deaminase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0008297	single-stranded DNA exodeoxyribonuclease activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0008409	5'-3' exonuclease activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009451	RNA modification	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0016070	RNA metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0016553	base conversion or substitution editing	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016782	transferase activity, transferring sulphur-containing groups	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016796	exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016810	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016814	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016895	DNA exonuclease activity, producing 5'-phosphomonoesters	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0019239	deaminase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0035312	5'-3' DNA exonuclease activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0043412	macromolecule modification	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0043565	sequence-specific DNA binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0045145	single-stranded DNA 5'-3' DNA exonuclease activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0050789	regulation of biological process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0050794	regulation of cellular process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0065007	biological regulation	IEP	Brassica rapa GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR011527	ABC1_TM_dom	68	343
IPR003439	ABC_transporter-like_ATP-bd	411	561

External Links

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Bra028221 (TAP2, ATTAP2, ABCB27,...)

Expression Profile

Co-expression Networks

Functional Annotation