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Bra028087 (RBCL)


Aliases : RBCL

Description : large subunit of ribulose-1,5-bisphosphat carboxylase/oxygenase heterodimer


Gene families : OG0002254 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0002254_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa (Bra) PCC: Bra028087
Cluster Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm): Cluster_48

Target Alias Description ECC score Gene Family Method Actions
Lsat_1_v5_gn_2_89801.1 RBCL large subunit of ribulose-1,5-bisphosphat... 0.05 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Lsat_1_v5_gn_4_102701.1 RBCL large subunit of ribulose-1,5-bisphosphat... 0.05 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_C0091.00041 RBCL large subunit of ribulose-1,5-bisphosphat... 0.04 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEA Interproscan
BP GO:0015977 carbon fixation IEA Interproscan
MF GO:0016984 ribulose-bisphosphate carboxylase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005092 GDP-dissociation inhibitor activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0005094 Rho GDP-dissociation inhibitor activity IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006334 nucleosome assembly IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006338 chromatin remodeling IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006754 ATP biosynthetic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0007264 small GTPase mediated signal transduction IEP Brassica rapa GO terms from Neighborhoods
BP GO:0007265 Ras protein signal transduction IEP Brassica rapa GO terms from Neighborhoods
BP GO:0007266 Rho protein signal transduction IEP Brassica rapa GO terms from Neighborhoods
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Brassica rapa GO terms from Neighborhoods
BP GO:0009142 nucleoside triphosphate biosynthetic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0009145 purine nucleoside triphosphate biosynthetic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0009201 ribonucleoside triphosphate biosynthetic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0009206 purine ribonucleoside triphosphate biosynthetic process IEP Brassica rapa GO terms from Neighborhoods
CC GO:0009521 photosystem IEP Brassica rapa GO terms from Neighborhoods
CC GO:0009522 photosystem I IEP Brassica rapa GO terms from Neighborhoods
CC GO:0009579 thylakoid IEP Brassica rapa GO terms from Neighborhoods
BP GO:0009767 photosynthetic electron transport chain IEP Brassica rapa GO terms from Neighborhoods
BP GO:0015979 photosynthesis IEP Brassica rapa GO terms from Neighborhoods
BP GO:0015986 proton motive force-driven ATP synthesis IEP Brassica rapa GO terms from Neighborhoods
MF GO:0016168 chlorophyll binding IEP Brassica rapa GO terms from Neighborhoods
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP Brassica rapa GO terms from Neighborhoods
BP GO:0019684 photosynthesis, light reaction IEP Brassica rapa GO terms from Neighborhoods
BP GO:0022900 electron transport chain IEP Brassica rapa GO terms from Neighborhoods
CC GO:0034357 photosynthetic membrane IEP Brassica rapa GO terms from Neighborhoods
BP GO:0034728 nucleosome organization IEP Brassica rapa GO terms from Neighborhoods
CC GO:0042651 thylakoid membrane IEP Brassica rapa GO terms from Neighborhoods
CC GO:0043226 organelle IEP Brassica rapa GO terms from Neighborhoods
CC GO:0043228 non-membrane-bounded organelle IEP Brassica rapa GO terms from Neighborhoods
CC GO:0043229 intracellular organelle IEP Brassica rapa GO terms from Neighborhoods
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Brassica rapa GO terms from Neighborhoods
MF GO:0048038 quinone binding IEP Brassica rapa GO terms from Neighborhoods
BP GO:0065004 protein-DNA complex assembly IEP Brassica rapa GO terms from Neighborhoods
CC GO:0098796 membrane protein complex IEP Brassica rapa GO terms from Neighborhoods
CC GO:0110165 cellular anatomical entity IEP Brassica rapa GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR017443 RuBisCO_lsu_fd_N 23 144
IPR000685 RuBisCO_lsu_C 154 462
No external refs found!