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  5. Bra027929

Bra027929 (PGN)


Aliases : PGN

Description : RNA editing factor *(PGN)


Gene families : OG0003088 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0003088_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa (Bra) PCC: Bra027929
Cluster Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm): Cluster_256


Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004843 cysteine-type deubiquitinase activity IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006508 proteolysis IEP Brassica rapa GO terms from Neighborhoods
MF GO:0008233 peptidase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0008234 cysteine-type peptidase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0008270 zinc ion binding IEP Brassica rapa GO terms from Neighborhoods
BP GO:0016579 protein deubiquitination IEP Brassica rapa GO terms from Neighborhoods
MF GO:0019783 ubiquitin-like protein peptidase activity IEP Brassica rapa GO terms from Neighborhoods
BP GO:0036211 protein modification process IEP Brassica rapa GO terms from Neighborhoods
MF GO:0043169 cation binding IEP Brassica rapa GO terms from Neighborhoods
BP GO:0043687 post-translational protein modification IEP Brassica rapa GO terms from Neighborhoods
MF GO:0046872 metal ion binding IEP Brassica rapa GO terms from Neighborhoods
MF GO:0046914 transition metal ion binding IEP Brassica rapa GO terms from Neighborhoods
BP GO:0070646 protein modification by small protein removal IEP Brassica rapa GO terms from Neighborhoods
BP GO:0070647 protein modification by small protein conjugation or removal IEP Brassica rapa GO terms from Neighborhoods
MF GO:0101005 deubiquitinase activity IEP Brassica rapa GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_rpt 446 477
IPR002885 Pentatricopeptide_rpt 352 374
IPR002885 Pentatricopeptide_rpt 417 443
IPR002885 Pentatricopeptide_rpt 381 411
IPR002885 Pentatricopeptide_rpt 250 277
IPR002885 Pentatricopeptide_rpt 178 204
IPR046848 E_motif 503 558
IPR002885 Pentatricopeptide_rpt 73 120
No external refs found!