Bra026869 (WRKY4)

Aliases : WRKY4

Description : WRKY-type transcription factor

Gene families : OG0002054 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0002054_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brassica rapa (Bra) PCC: Bra026869
Cluster	Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm): Cluster_117

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
MF	GO:0043565	sequence-specific DNA binding	IEA	Interproscan
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003723	RNA binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0003729	mRNA binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0003854	3-beta-hydroxy-delta5-steroid dehydrogenase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0004057	arginyl-tRNA--protein transferase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0004672	protein kinase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0005515	protein binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0005543	phospholipid binding	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0005634	nucleus	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006354	DNA-templated transcription elongation	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006368	transcription elongation by RNA polymerase II	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006396	RNA processing	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006468	protein phosphorylation	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006621	protein retention in ER lumen	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006694	steroid biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006793	phosphorus metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006796	phosphate-containing compound metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006904	vesicle docking involved in exocytosis	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0008023	transcription elongation factor complex	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0008202	steroid metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0008289	lipid binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0008375	acetylglucosaminyltransferase activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009966	regulation of signal transduction	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0010646	regulation of cell communication	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0016070	RNA metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016229	steroid dehydrogenase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016301	kinase activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0016310	phosphorylation	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0016598	protein arginylation	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0022406	membrane docking	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0023051	regulation of signaling	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0030695	GTPase regulator activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0031625	ubiquitin protein ligase binding	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0032012	regulation of ARF protein signal transduction	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0032182	ubiquitin-like protein binding	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0032507	maintenance of protein location in cell	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0033764	steroid dehydrogenase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0035091	phosphatidylinositol binding	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0035145	exon-exon junction complex	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0035437	maintenance of protein localization in endoplasmic reticulum	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0036211	protein modification process	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0043130	ubiquitin binding	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0043170	macromolecule metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0043412	macromolecule modification	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0044389	ubiquitin-like protein ligase binding	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0045185	maintenance of protein location	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0046578	regulation of Ras protein signal transduction	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0046923	ER retention sequence binding	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0048278	vesicle docking	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0051056	regulation of small GTPase mediated signal transduction	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0051640	organelle localization	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0051651	maintenance of location in cell	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0060589	nucleoside-triphosphatase regulator activity	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0070449	elongin complex	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0072595	maintenance of protein localization in organelle	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0140029	exocytic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0140056	organelle localization by membrane tethering	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0140096	catalytic activity, acting on a protein	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0140513	nuclear protein-containing complex	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:1902531	regulation of intracellular signal transduction	IEP	Brassica rapa GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR003657	WRKY_dom	380	436
IPR003657	WRKY_dom	219	275

External Links

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Bra026869 (WRKY4)

Expression Profile

Co-expression Networks

Functional Annotation