Bra026249 (EXT6)

Aliases : EXT6

Description : classical extensin

Gene families : OG0026669 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brassica rapa (Bra) PCC: Bra026249
Cluster	Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm): Cluster_9

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005198	structural molecule activity	None	Extended
MF	GO:0005199	structural constituent of cell wall	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009664	plant-type cell wall organization	IEA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0045229	external encapsulating structure organization	None	Extended
BP	GO:0071554	cell wall organization or biogenesis	None	Extended
BP	GO:0071555	cell wall organization	None	Extended
BP	GO:0071669	plant-type cell wall organization or biogenesis	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004386	helicase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0004568	chitinase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0004650	polygalacturonase activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006022	aminoglycan metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006026	aminoglycan catabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006030	chitin metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006032	chitin catabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006040	amino sugar metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009057	macromolecule catabolic process	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0016998	cell wall macromolecule catabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0044036	cell wall macromolecule metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0046348	amino sugar catabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:1901071	glucosamine-containing compound metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:1901072	glucosamine-containing compound catabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:1901135	carbohydrate derivative metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:1901136	carbohydrate derivative catabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:1901565	organonitrogen compound catabolic process	IEP	Brassica rapa GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR006706	Extensin_dom	39	90
IPR006706	Extensin_dom	65	116

External Links

No external refs found!

Bra026249 (EXT6)

Expression Profile

Co-expression Networks

Functional Annotation