Bra025617 (NRPD6A, NRPE6A, NRPB6A)

Aliases : NRPD6A, NRPE6A, NRPB6A

Description : component *(NRP-ABCDE6) of RNA polymerase complexes

Gene families : OG0030088 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brassica rapa (Bra) PCC: Bra025617
Cluster	Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm): Cluster_219

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006351	DNA-templated transcription	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016779	nucleotidyltransferase activity	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
MF	GO:0034062	5'-3' RNA polymerase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097747	RNA polymerase activity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000375	RNA splicing, via transesterification reactions	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0000398	mRNA splicing, via spliceosome	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0003725	double-stranded RNA binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0004813	alanine-tRNA ligase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0005261	monoatomic cation channel activity	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0005839	proteasome core complex	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006419	alanyl-tRNA aminoacylation	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006508	proteolysis	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006888	endoplasmic reticulum to Golgi vesicle-mediated transport	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0015252	proton channel activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0015986	proton motive force-driven ATP synthesis	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016866	intramolecular transferase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016868	intramolecular transferase activity, phosphotransferases	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016874	ligase activity	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0030880	RNA polymerase complex	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0031625	ubiquitin protein ligase binding	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0031966	mitochondrial membrane	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0042393	histone binding	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0044030	regulation of DNA methylation	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0044389	ubiquitin-like protein ligase binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0046933	proton-transporting ATP synthase activity, rotational mechanism	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0051052	regulation of DNA metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0051603	proteolysis involved in protein catabolic process	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0061695	transferase complex, transferring phosphorus-containing groups	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0140535	intracellular protein-containing complex	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:1901564	organonitrogen compound metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:1902494	catalytic complex	IEP	Brassica rapa GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR006110	Pol_omega/Rpo6/RPB6	61	112

External Links

No external refs found!

Bra025617 (NRPD6A, NRPE6A, NRPB6A)

Expression Profile

Co-expression Networks

Functional Annotation