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  5. Bra025609

Bra025609 (AGL43)


Aliases : AGL43

Description : MADS/AGL-type transcription factor


Gene families : OG0008502 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa (Bra) PCC: Bra025609
Cluster Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm): Cluster_6

Target Alias Description ECC score Gene Family Method Actions
Bra025607 AGL77 MADS/AGL-type transcription factor 0.02 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Bra025619 AGL77 MADS/AGL-type transcription factor 0.02 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0046983 protein dimerization activity IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006308 DNA catabolic process IEP Brassica rapa GO terms from Neighborhoods
MF GO:0008171 O-methyltransferase activity IEP Brassica rapa GO terms from Neighborhoods
BP GO:0019439 aromatic compound catabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0034655 nucleobase-containing compound catabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0044270 cellular nitrogen compound catabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0046700 heterocycle catabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:1901361 organic cyclic compound catabolic process IEP Brassica rapa GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR002100 TF_MADSbox 26 65
No external refs found!