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  5. Bra002470

Bra002470


Description : E3 ubiquitin ligase


Gene families : OG0004334 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0004334_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa (Bra) PCC: Bra002470
Cluster Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm): Cluster_141


Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000439 transcription factor TFIIH core complex IEP Brassica rapa GO terms from Neighborhoods
CC GO:0005667 transcription regulator complex IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006259 DNA metabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006281 DNA repair IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006289 nucleotide-excision repair IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006508 proteolysis IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006807 nitrogen compound metabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006974 DNA damage response IEP Brassica rapa GO terms from Neighborhoods
BP GO:0008152 metabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0009057 macromolecule catabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0019538 protein metabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0019941 modification-dependent protein catabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0033554 cellular response to stress IEP Brassica rapa GO terms from Neighborhoods
BP GO:0043170 macromolecule metabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0044238 primary metabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0051603 proteolysis involved in protein catabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0051716 cellular response to stimulus IEP Brassica rapa GO terms from Neighborhoods
BP GO:0071704 organic substance metabolic process IEP Brassica rapa GO terms from Neighborhoods
CC GO:0090575 RNA polymerase II transcription regulator complex IEP Brassica rapa GO terms from Neighborhoods
MF GO:0140096 catalytic activity, acting on a protein IEP Brassica rapa GO terms from Neighborhoods
CC GO:0140513 nuclear protein-containing complex IEP Brassica rapa GO terms from Neighborhoods
BP GO:1901564 organonitrogen compound metabolic process IEP Brassica rapa GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR011016 Znf_RING-CH 253 300
No external refs found!