Bra023726

Description : basal transcription factor *(TFIa/RRN3)

Gene families : OG0003884 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0003884_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brassica rapa (Bra) PCC: Bra023726
Cluster	Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm): Cluster_286

Type	GO Term	Name	Evidence	Source
MF	GO:0001181	RNA polymerase I general transcription initiation factor activity	IEA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006352	DNA-templated transcription initiation	None	Extended
BP	GO:0006361	transcription initiation at RNA polymerase I promoter	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0140223	general transcription initiation factor activity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0001101	response to acid chemical	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0004126	cytidine deaminase activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006213	pyrimidine nucleoside metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006216	cytidine catabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006835	dicarboxylic acid transport	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009116	nucleoside metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009119	ribonucleoside metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009164	nucleoside catabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009415	response to water	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009628	response to abiotic stimulus	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009972	cytidine deamination	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0010035	response to inorganic substance	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0015740	C4-dicarboxylate transport	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0015743	malate transport	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016814	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0019239	deaminase activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0034655	nucleobase-containing compound catabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0034656	nucleobase-containing small molecule catabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0042454	ribonucleoside catabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0046087	cytidine metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0046131	pyrimidine ribonucleoside metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0046133	pyrimidine ribonucleoside catabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0046135	pyrimidine nucleoside catabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0072527	pyrimidine-containing compound metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0072529	pyrimidine-containing compound catabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:1901657	glycosyl compound metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:1901658	glycosyl compound catabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:1901700	response to oxygen-containing compound	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:1902074	response to salt	IEP	Brassica rapa GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR007991	RNA_pol_I_trans_ini_fac_RRN3	79	126

External Links

No external refs found!

Bra023726

Expression Profile

Co-expression Networks

Functional Annotation