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  5. Bra023504

Bra023504


Description : pectate lyase. EC_4.2 carbon-oxygen lyase


Gene families : OG0002986 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0002986_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa (Bra) PCC: Bra023504
Cluster Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm): Cluster_66


Type GO Term Name Evidence Source
MF GO:0030570 pectate lyase activity IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0005681 spliceosomal complex IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006778 porphyrin-containing compound metabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP Brassica rapa GO terms from Neighborhoods
MF GO:0008430 selenium binding IEP Brassica rapa GO terms from Neighborhoods
BP GO:0015994 chlorophyll metabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0015995 chlorophyll biosynthetic process IEP Brassica rapa GO terms from Neighborhoods
MF GO:0016846 carbon-sulfur lyase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0030246 carbohydrate binding IEP Brassica rapa GO terms from Neighborhoods
BP GO:0042440 pigment metabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0046148 pigment biosynthetic process IEP Brassica rapa GO terms from Neighborhoods
MF GO:0046406 magnesium protoporphyrin IX methyltransferase activity IEP Brassica rapa GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR002022 Pec_lyase 236 396
IPR007524 Pec_lyase_N 25 104
No external refs found!